Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04235 ATGTCTATTATGTGtactttgtgtttttttgttgtgaCAGAGAAAATATTGCCTGTTGTAAGAAATCAACATTTACTGCTTTGTACCCTTCTAATTTGCAATGCAGCAGCTATGGAGGCACTTCCAATTTTTCTTGATAGTCTTGTTGTTGCTTGGGGTGCTATTCTGATTTCTGTGACATTAATTCTTCTGTTTGGTGAGattattCCTCAATCAGTTTGTTCTCGGTATGGTTTAACAATTGGTGCAACAATAGCTCCAGCTGTTCGTGTTCTTGTATGGATATGTCTTCCTGTTGCTTATCCAATTAGCAAGTTGTTGGATTATTTGTTGGGGCATCGACACGAAGCCCTTTTCCGTAGAGCCGAGTTGAAAACGCTTGTAGATTTACATGGTAATGAGGCTGGCAAAGGTGGTGAATTAACACATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCTCTGAGAAGACTGCTGGTGATGCCATGACTCctataaatgaaatattttctaTTGATATTAATTCAAAACTTGATAGGGATTTGATGACTCTAATATTGGAGAAAGGACATAGTAGAGTCCCTGTTTATTATGAGGAGCCTACAAATATCATTGGACTTATCTTGATAAAGAATTTGTTAACTATTGATCCAGAAGAAGAAGTACCTGTGAAAAGTGTGACCATACGAAAAATACCAAGGGTTCCAGAAATGATGCCACTTTATGATATATTGAATGAATTCCAAAAGGGCCATAGTCACATGGCTGTTGTTGTGAGAAATTTTGACAAGACAGAGCAACAAACTTCCAATAATAATTGCAGTGATTCAGTAAGAGATGTGAAGGTGACTATTGATGTGGAGAAGACTCCTCAACAagagaaaatgttgaaaaataagaTGCAACTTCATAAGAGGAAAAGTTTACCAAATGCAAGTAATTCAAATATGAGTACTAGTTCTAGGAGCAAAAAATGGTCACAAAATATATACTCAGATATTTTGGAAATTGATGGAAATTCAATTCCAAAACTACCTGAAAAAGAAGAAGCTGTTGGAATAATTACAATGGAAGATGTAATTGAAGAGCTTTTGCAgGAGGAAATCTTTGATGAGACAGATCATCATTTTGAAGACTCATAA 1146 0.3447 MSIMCTLCFFVVTEKILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVVAWGAILISVTLILLFGEIIPQSVCSRYGLTIGATIAPAVRVLVWICLPVAYPISKLLDYLLGHRHEALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKTAGDAMTPINEIFSIDINSKLDRDLMTLILEKGHSRVPVYYEEPTNIIGLILIKNLLTIDPEEEVPVKSVTIRKIPRVPEMMPLYDILNEFQKGHSHMAVVVRNFDKTEQQTSNNNCSDSVRDVKVTIDVEKTPQQEKMLKNKMQLHKRKSLPNASNSNMSTSSRSKKWSQNIYSDILEIDGNSIPKLPEKEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04235 381 ProSiteProfiles CBS domain profile. 164 225 IPR000644 -
Tsu08g04235 381 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 13 381 - -
Tsu08g04235 381 Gene3D - 145 287 IPR046342 -
Tsu08g04235 381 CDD CBS_pair_CorC_HlyC_assoc 159 260 IPR044751 -
Tsu08g04235 381 Gene3D - 291 373 IPR046342 -
Tsu08g04235 381 Pfam Cyclin M transmembrane N-terminal domain 14 144 IPR002550 -
Tsu08g04235 381 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 13 381 IPR045095 GO:0010960
Tsu08g04235 381 ProSiteProfiles CNNM transmembrane domain profile. 1 145 IPR002550 -
Tsu08g04235 381 SUPERFAMILY CBS-domain pair 148 367 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04235 Tsu-Chr8 60407345 60410780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04235 K16302 - gmx:100795897 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01722 02 15148264 15153409 Tsu08g04235 08 60407345 60410780 PCT