Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03947 ATGTCTAGTTCATTGCAAAACGACACCGTTCAAGgctcatcttcatcatcacgGCCCAACGGCGCCGATCAACAACCAACGGTCGTAGCTCCGTTGAGCCGTTACGAGTCACAAAAGAAACGTGATTGGAACACTTTTGGACAATACTTAAGGAACCAAACACCACCAGTTTCTTTGTCTCAGTGCAACTTCAACCATGTACTTGAGTTTCTTCGTTACTTAGATCAATTTGGAAAGACTAAGGTTCACTTGCACGGTTGCATCTTTTTCGGACAACCTGATCCGCCGGCACCTTGTACTTGTCCTTTGAGACAAGCTTGGGGAAGTCTTGATGCACTCATCGGACGGCTAAGAGCCGCTTACGAAGAACACGGTGGATCGCCGGAGAATAACCCGTTCGGAACCGGAGCTATTCGTGTTTACCTTCGTGAAGTTAAGGAGTGTCAGTCAAAAGCTAGAGGGATTCCATacacaaagaaaaagaagaagagaagtcAAATTAAGGGACCTCACAATAATACTTCCAAGTCCTTCAAGCAATTAACTTCTTGA 552 0.4203 MSSSLQNDTVQGSSSSSRPNGADQQPTVVAPLSRYESQKKRDWNTFGQYLRNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPENNPFGTGAIRVYLREVKECQSKARGIPYTKKKKKRSQIKGPHNNTSKSFKQLTS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03947 183 PANTHER PROTEIN G1-LIKE2 2 176 IPR040222 -
Tsu08g03947 183 MobiDBLite consensus disorder prediction 155 169 - -
Tsu08g03947 183 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 2 176 - -
Tsu08g03947 183 MobiDBLite consensus disorder prediction 152 183 - -
Tsu08g03947 183 MobiDBLite consensus disorder prediction 1 32 - -
Tsu08g03947 183 Pfam ALOG domain 30 147 IPR006936 -
Tsu08g03947 183 MobiDBLite consensus disorder prediction 1 34 - -
Tsu08g03947 183 ProSiteProfiles ALOG domain profile. 34 161 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03947 Tsu-Chr8 57768510 57772546 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03947 - - gmx:100306082 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03947 08 57768510 57772546 Tsu08g03947 08 57768510 57772546 ECH
Tsu02g04274 02 50853444 50856530 Tsu08g03947 08 57768510 57772546 ECH
Tsu02g05027 02 59324441 59328294 Tsu08g03947 08 57768510 57772546 ECH
Tsu02g02992 02 32997429 32997971 Tsu08g03947 08 57768510 57772546 ECH