Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04274 atgtccaacaaaggAAAAGACATAGTAGAAGGATCATCAAGATCTTCTACTACTTCAATTTCAACCGGTGGCGGCGATCATCAGCAgcatcagcaacaacaacagGTTCCACTTAGTCGATACGAGTCACAAAAGAGAAGAGACTGGAACACTTTCGGACAATATTTAAGGAATCAAAGGCCACCGGTAGCACTTTCTCAATGTAATTCAAACCATGTTCTTGAATTCCTAAGATACTTGGATCAATTTGGAAAGACAAAAGTGCACTTACAAGGTTGTTTGTTTTTCGGACAAACAGAACCGCCGGGACCATGTACTTGTCCTCTAAAACAAGCTTGGGGAAGTCTTGATGCACTTATTGGAAGATTAAGAGCTGCTTATGAAGAAAATGGTGGATTACCTGAGACTAATCCTTTTGCTAGTGGTTCCATAAGAATTTATCTTCGTGAGGTGAGAGATTCTCAAGCTAAGGCAAGAGGAATTCCttacaagaagaaaaagaagaaaagaattgcAATTAAACATAACGGGGATACTTCAACTTTGCCTATGCAGTGA 558 0.3566 MSNKGKDIVEGSSRSSTTSISTGGGDHQQHQQQQQVPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNHVLEFLRYLDQFGKTKVHLQGCLFFGQTEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGSIRIYLREVRDSQAKARGIPYKKKKKKRIAIKHNGDTSTLPMQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04274 185 MobiDBLite consensus disorder prediction 1 40 - -
Tsu02g04274 185 PANTHER PROTEIN G1-LIKE2 2 185 IPR040222 -
Tsu02g04274 185 Pfam ALOG domain 32 153 IPR006936 -
Tsu02g04274 185 MobiDBLite consensus disorder prediction 1 44 - -
Tsu02g04274 185 ProSiteProfiles ALOG domain profile. 40 167 IPR006936 -
Tsu02g04274 185 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 2 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04274 Tsu-Chr2 50853444 50856530 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04274 - - gmx:100527554 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05027 02 59324441 59328294 Tsu02g04274 02 50853444 50856530 ECH
Tsu02g02992 02 32997429 32997971 Tsu02g04274 02 50853444 50856530 ECH
Tsu02g04274 02 50853444 50856530 Tsu08g03947 08 57768510 57772546 ECH
Tsu02g04274 02 50853444 50856530 Tsu02g04274 02 50853444 50856530 ECH