Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02872 ATGGATGCGTATGGTTTCTCTGGATCGTGTGATCGTGCTTCTAACCTTTTGGCAGAGCTTTGTGTTATCCTCAGAGGGTTTCAATTGGCTTGGGACTTAGGCTTTCGTACCATTACCTTGGAATCTGATTCCAAATCAGATATTGATCTCATCCTTGAAGATGACAATAATTTTCACCCTCACatGTTGTTTGTGAATATGTCTCTTCTATCTAGCACTGACTTGCATCGTATTTTTGAGAAGCTAGACACAAATTGCGACGGTTTTGTAAGTCTTGAGGAGCTAAATTGGGTGCTCCAAAGAataggtaataataataataattctcaATTTAGCTTAGATGAGCTTGAATCTCTTGTGGAAAAAAAGAGCTTAGATTTCAATGAATTCTTGTTCTTTTACAACTctatatcaaaacaaaacaatggaGAAAACAAAGGAGgtgatgatattgatgatgatgagttgGAGAGAGATCTTGTGAAGACTTTTAAAGTGTTTGATTTGGATGGAGATGGATTCATCACAAGCCAAGAGCTTGAATGTGTTTTGAAGAGACTTGGATTCTTGGATGAAAGAAGTGGTAAGGATTGTAGAAGCATGATTCGGTTTTATGATACAAATTTAGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGCTTACAACTGCATGA 684 0.3377 MDAYGFSGSCDRASNLLAELCVILRGFQLAWDLGFRTITLESDSKSDIDLILEDDNNFHPHMLFVNMSLLSSTDLHRIFEKLDTNCDGFVSLEELNWVLQRIGNNNNNSQFSLDELESLVEKKSLDFNEFLFFYNSISKQNNGENKGGDDIDDDELERDLVKTFKVFDLDGDGFITSQELECVLKRLGFLDERSGKDCRSMIRFYDTNLDGRLDFQEFKNMMLLTTA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02872 227 Gene3D - 49 136 - -
Tsu08g02872 227 Gene3D - 148 226 - -
Tsu08g02872 227 CDD RNase_H_like 4 78 IPR044730 -
Tsu08g02872 227 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Tsu08g02872 227 ProSiteProfiles EF-hand calcium-binding domain profile. 193 227 IPR002048 GO:0005509
Tsu08g02872 227 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Tsu08g02872 227 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 67 225 - -
Tsu08g02872 227 Pfam Reverse transcriptase-like 11 62 IPR002156 GO:0003676|GO:0004523
Tsu08g02872 227 Pfam EF-hand domain pair 160 222 IPR002048 GO:0005509
Tsu08g02872 227 Pfam EF hand 78 95 IPR002048 GO:0005509
Tsu08g02872 227 SUPERFAMILY EF-hand 74 224 IPR011992 -
Tsu08g02872 227 SMART efh_1 74 102 IPR002048 GO:0005509
Tsu08g02872 227 SMART efh_1 197 225 IPR002048 GO:0005509
Tsu08g02872 227 SMART efh_1 159 187 IPR002048 GO:0005509
Tsu08g02872 227 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 67 225 - -
Tsu08g02872 227 CDD EFh 159 222 IPR002048 GO:0005509
Tsu08g02872 227 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Tsu08g02872 227 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02872 Tsu-Chr8 43887953 43889718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02872 68 223 EF-hand Containing Proteins AT1G21550 44.872 1.70e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02872 K13448 - gmx:100527117 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01050 01 9642562 9643005 Tsu08g02872 08 43887953 43889718 PCT