Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01050 ATGTGTCCCCTAACTCCCAAAGAATTGGAGCTGATTTTTGAGAAGTTAGACATAAATAGTGATGGATTTTTAACCCTTGAGGAGCTGAACCTTTTGTTAGAGAGAACAGGTTTCAAGTTTAGCATAGAGGAGCTTGAATCTCTAGTGGGAAAAAAGAGTCTAGACTTGAGTGAGTTCATGTTCTTTTATGATTCCATATTGAATCACAAAAATGGTGATGTTGATGAGATTGAAGAGATAGAAAGTGACCTTTTGAAGGCATTCAAGGTGTTTGATTTGGATGGAGATGGATTCATCACTAGTCAAGAATTGGAATATGTGTTGAAGAGACTTGGTATGTGGGATGAAGAAAAGGATAGTAGATCAATGATTTACTCATATGATACTAATTTAGATGGCAAGCTTGATTTCAAGGAATTTAAGAACATGATGTTGCTAACATAA 444 0.3536 MCPLTPKELELIFEKLDINSDGFLTLEELNLLLERTGFKFSIEELESLVGKKSLDLSEFMFFYDSILNHKNGDVDEIEEIESDLLKAFKVFDLDGDGFITSQELEYVLKRLGMWDEEKDSRSMIYSYDTNLDGKLDFKEFKNMMLLT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01050 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Tsu01g01050 147 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Tsu01g01050 147 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 3 146 - -
Tsu01g01050 147 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Tsu01g01050 147 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 146 - -
Tsu01g01050 147 SMART efh_1 83 111 IPR002048 GO:0005509
Tsu01g01050 147 SMART efh_1 119 147 IPR002048 GO:0005509
Tsu01g01050 147 SMART efh_1 8 36 IPR002048 GO:0005509
Tsu01g01050 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Tsu01g01050 147 Gene3D - 3 67 - -
Tsu01g01050 147 SUPERFAMILY EF-hand 7 145 IPR011992 -
Tsu01g01050 147 Gene3D - 68 147 - -
Tsu01g01050 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Tsu01g01050 147 CDD EFh 83 144 IPR002048 GO:0005509
Tsu01g01050 147 Pfam EF hand 12 32 IPR002048 GO:0005509
Tsu01g01050 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01050 Tsu-Chr1 9642562 9643005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01050 4 145 EF-hand Containing Proteins AT1G21550 44.595 4.31e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01050 K13448 - gmx:100779760 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01050 01 9642562 9643005 Tsu08g02872 08 43887953 43889718 PCT