Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02719 ATGCGCTCAGGAGTTTATACATTACAAGAGACACTAACAGCCGAGTCTGCTTCAATCTTGAAGCATTCTTTAGGCTTAGCACGTAGAAGAGGTCATGCACAAATTACACCTCTTCATGTTGCTGCTACATTGTTGAGTTTAAATGCTTCTTCCCTTCGAAAAGCATGTCTTAAATCTCAACAACAAAACATTAATCATCCACTTCAATGTCGAGCTCTTGAACTTTGTTTCAATGTTGCTCTTAATAGACTTCCAACTATTACTACTACCAGTACTACTACTACTTCGCATTTTATTCAACACCAACATGTTCCTTCGCTTTCGAATGCGCTTATTGCTGCTCTTAAAAGAGCTCAAGCTCATCAAAGAAGGGGGTGTATTGagcaaaatcaacaacaaaatcaacaaccaCTTTTGAGTGTTAAAGTTGAACTTGATCAGCTTATTCTTTCTATTCTTGATGACCCTTCTGTTAGTAGAGTTATGAGAGAAGCTGGTTTTTCAAGTACTTCTGTTAAAAATAACTTAGAACATGAAAatcatcattcttcatctttCACAAACCCTTCTCTTTTTCATTCTCTAAGtcataataatcataataataaccACCATTTTTTGAGTTCTTATGGTAATGTTTATGGTAATTATGGTTATGgttctgttttgttttctcCTCAGAAGAAACCACCACAAGTGTTTAATCATTTTCCTTTACAATCTTGTAAAGAAGATGTTAATTTTAAGCTTGTTTTTGATGTTCTTTTGAGGAAGAACAAAAGAAATGCTGTGATAGTTGGTGATACAGTTTCATTAACAGAAGGATTAGTTAGTGAGTTAAtggaaaaatttgaaagaaatgaagttcctaatgagttaaaaaaaactcattttgtcaAGTTTCATCTTGGTTCTATTTCTTTGAAGTTAATGAAAAAGGAAGAAGTTGAAATGAATGTTTTAAGAGTGTTGAAAAGGAAAATTAGTGATTATGTTGCATTAGGTGTTGGAGCTGTTTTTTATGTTGGTGATTTGAAGTGGATAGTGgattgtgatgataatgatgaaagTTGTTATAATCATGTTGATTATTTGGTTGATGAAATTGGAAAGTTGTTTTGTGAAGAAGAGAATAATAATGGTAAGATTTGGCTTATTGCAACAGCTACTTATCAAAGTTACATGAGGTGTCAAATGAGGGTACCGAATCTTGAGAATCAATGGTGTCTTCAAGCTGTTCCTGTTccatctggtggacttggatTAAGTCTTCATTCTTCAAgTGTGCATGATTCAAAAATGAGCATATCTCAAAACCCTTCTCCTATGTTTGAATCAAAGCTCTTTAGTACTAACAAGGAGGAACATGATAAGCTTAATTGTTGTGAAGAATGTGCCACCAACTATGAAAAAGAAGCTCAATTGATCAAACCAAGTCAGAAGAATCTTTTGCCTTCATGGCTTCAGTCTCATAGCACAGAAGCTAATCAGAAGGATGAATTAATccaattgaagaaaaagtgGAACAGATTGTGCCAATGTATCCACCAAAACAAACAACCTCAAAACCATTGGAACAACCCTTATAATTCTAATGCAAAAATTTACCCTTATAATTCATCATATCCTTATTGGCCAAACCAAGTTAATAGTATCTTGCAAGATTCATCAAGTTCAATATCTTTTGTTGATTCTATAACCAAACCAGCTTATAGCTCAAACACTATACCCCGATTCCGGCGCCAACAATCATCTACCATTGAGTTCAATTTCAATGATGAAAAAACACAGAAaaaccaaacaacaacaacagcaacaacaacaaacttGGATTCTCTTAAAGATGTAGTTAAGACAACTCTTGCTCTTGGAAATTCAACATTCAATGATTTAGAgcaaaaaaagattgaaaatttagCACTGAAAAGAGAACATATTTGTAAAGTGTTGCAAGAGAATGTTCCATGGCAATATGAAACAGTTAGTTCAATAGCAGAAGCTTTGGTTgattcatcaaaatcatcaaaggAAAGTGTAACTTGGTTGTTTTTGCAAGGGAATGATAATGTTGGGAAAAAAAGATTGGCACTTGCAATTGCAGAATCAGTTTTTGGATCAGTTGATGTGTTACTTCATTTGGATATGTTGAAGAGAGAAAATTCAGAAACACCCTTTTCTGAAATGGTTATTGGGCCAttgaaaaataatgaaaagtttgtttttttggttgaaaatgTTGATTTTGGTGATACCCTTTTAAGGAAAATGATTGAAGATGAATTTGGTGTTGCAAAGTTTGGAACTTTAGGccaaaaaatattcattttgacCAATGGGGGCAATATGGTCAGTGAAGATCAGAAGAAGGATTCAGTGAAGAAGTTGGTTTTGAAGATTAgtgaaagtgaaaaaaaatcaactttggagttgtcatcatcttcatcctcaTCAAAATCACTTTGTTTAGGTAATAAAAGAAGAgctgaatttgaattttttagcAAGATGAAAAATTCaaggattgaagaaaatgaagggaagaaaaagagagaattttcattttcaagacAATTAAGCTTGAATAACACTCTTGACTTGAACATGaaagttgatgatgatgaagaagatgatgaagataatGAGGGAGAAAATAGTCCAATTTCAAGTGATTTGACAAGAGAAATAGTAGGAGAGCATTTGATCTCAAATGGGTCATTTGAGTCAATTGAGAATTTGTTTGAGTTGAGTCAAAGTCCAGCTAAGAAGAAGGAAATGACAAAGATGTTTATGTCAAGGGTAAAAGAGTCATTTGAGGAGGTTTTTGGGAAAGTAAAATTTAGTGTACAAGATAAGGTGATAGAGGAAATTGGTGTTGGGGGGATTGGTTCTTTTACTAACAACATGTTTGAGAAATGGTTAAaagacatttttcaaacaaGTTTAGAGAGGGTTAATGGTGGGGGTAAAAATGGTATAGTTTTTACACTTTGTGGGGGTGGTAAAGAGGATAGAAAATGGGATAGTGGGTTTATGGGTTCATGTTTGCCTAAAAATATCCAAATTGTTAACTACTTAATGGATTGA 3084 0.2863 MRSGVYTLQETLTAESASILKHSLGLARRRGHAQITPLHVAATLLSLNASSLRKACLKSQQQNINHPLQCRALELCFNVALNRLPTITTTSTTTTSHFIQHQHVPSLSNALIAALKRAQAHQRRGCIEQNQQQNQQPLLSVKVELDQLILSILDDPSVSRVMREAGFSSTSVKNNLEHENHHSSSFTNPSLFHSLSHNNHNNNHHFLSSYGNVYGNYGYGSVLFSPQKKPPQVFNHFPLQSCKEDVNFKLVFDVLLRKNKRNAVIVGDTVSLTEGLVSELMEKFERNEVPNELKKTHFVKFHLGSISLKLMKKEEVEMNVLRVLKRKISDYVALGVGAVFYVGDLKWIVDCDDNDESCYNHVDYLVDEIGKLFCEEENNNGKIWLIATATYQSYMRCQMRVPNLENQWCLQAVPVPSGGLGLSLHSSSVHDSKMSISQNPSPMFESKLFSTNKEEHDKLNCCEECATNYEKEAQLIKPSQKNLLPSWLQSHSTEANQKDELIQLKKKWNRLCQCIHQNKQPQNHWNNPYNSNAKIYPYNSSYPYWPNQVNSILQDSSSSISFVDSITKPAYSSNTIPRFRRQQSSTIEFNFNDEKTQKNQTTTTATTTNLDSLKDVVKTTLALGNSTFNDLEQKKIENLALKREHICKVLQENVPWQYETVSSIAEALVDSSKSSKESVTWLFLQGNDNVGKKRLALAIAESVFGSVDVLLHLDMLKRENSETPFSEMVIGPLKNNEKFVFLVENVDFGDTLLRKMIEDEFGVAKFGTLGQKIFILTNGGNMVSEDQKKDSVKKLVLKISESEKKSTLELSSSSSSSKSLCLGNKRRAEFEFFSKMKNSRIEENEGKKKREFSFSRQLSLNNTLDLNMKVDDDEEDDEDNEGENSPISSDLTREIVGEHLISNGSFESIENLFELSQSPAKKKEMTKMFMSRVKESFEEVFGKVKFSVQDKVIEEIGVGGIGSFTNNMFEKWLKDIFQTSLERVNGGGKNGIVFTLCGGGKEDRKWDSGFMGSCLPKNIQIVNYLMD 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02719 1027 Gene3D - 240 417 IPR027417 -
Tsu08g02719 1027 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 998 - -
Tsu08g02719 1027 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Tsu08g02719 1027 MobiDBLite consensus disorder prediction 865 888 - -
Tsu08g02719 1027 Gene3D - 610 748 IPR027417 -
Tsu08g02719 1027 PANTHER PROTEIN SMAX1-LIKE 5 1 998 - -
Tsu08g02719 1027 SUPERFAMILY Double Clp-N motif 11 175 IPR036628 -
Tsu08g02719 1027 Gene3D - 9 181 IPR036628 -
Tsu08g02719 1027 MobiDBLite consensus disorder prediction 869 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02719 Tsu-Chr8 41645497 41650541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02719 - - cam:101489668 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04565 04 53257624 53261420 Tsu08g02719 08 41645497 41650541 PCT