Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04565 ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGCCATCCACAGGTCACTCCTCTTCATGTAGCCATCACTTTGCTAACCTTAAGACTCAGTTCTTTCAAAAGAGCATGTCTTAAATCTCATCAACCTCACCACCAAACTTCACAACATCCACTTCAATCTAGAGCTCTTGAGCTTTGTTTCAATGTAGCTCTTAACAGGTTACCAACTACACCTTCTCCTTTGATTCACTCTCAGCCTTCACTTTCCAATGCTCTCATTGCTGCATTGAAAAGAGCACAAGCTCATCAAAGAAGAGGTTCCATAGaacaacagcagcaacaacagcagcagcaaaCAGTTCTTACTGTGAAAGTTGAGCTTGAACAGCTTATTATATCTATTCTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGATTTTCTAGCACTCTTGTTAAGAACAATTTAGAAGACTCTTGTTCACCTTCTAATTCTGTTTTTAAATGTTATAATAGTTCTGGTGGTGGTGTTTTTTCATCTCCTTGTTCACCTTCTACTAGTGAGAATCATAGAGAAACCATTAACCTTAGCAGTTTCAGACAGAACCATTTCATGGCTGCTACTACTAGTGCTAAGTACAATTCTTCAGAGTTTAACTCAGTTCTGTTTTCTCCACCAAAGAGAACTGAGTTGATGAATACATCAACTGGACTTGGCTTAACCCTTCATTCTTCTTCCAGTGTTCTTGATTCAAAGATAACTATCTCTCAGAACCAATCTCATCATATGCTGGAAACAAAGCCCTTTTGTAGTAATAAGGAGCTAGAGGATAAGCTTAATTGCTGTGAAGAATGTGcctcaaattatgaaaaagAAGCTCAGTTTCTCAAACCTGAACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACAAAAGAAGGATGGATTAACCGAGTTGAAAAGAAAATGGAATAGACTGTGCCACTGTCTCCACCAAAACAAACAGCATCAGAACCACTGGAACTGGAGCAACAATAACAGTTCAAACCCCAACAACTCATCAAGTTCCTTATCTTATAGCTCCAATCTTACACCTCGATTCCGTCGCCAACAATCATGCAGCACTATTGAGTTCAGTTTCAATGATAATAGGCAAGCAACAGAACCATTCCTTGCTTCCCTTGCAAGCATGGAAGGTAAAGAAGTAAAAATCAGTCTTACACTTGGAAATGGTGATTCAAGTGAAAAGGTGGGAAATATAACTGATACAAAACTGCAACAAGCTCATGTGTGTAAACTATTGCAGGAGAATGTGCCATGGCAATCTGAAACTATTCCTTCAATAGCAAAGGCTTTGACGGATACCAAATCGACAAAACAAAGTGAAACTATATTTACATGGTTTGTTTTACAAGGCAATGATTTCACAGGCAAAAGAAGATTAACACTTGCTATTGCAGAATCAGTTTTTGGTTCAGCTGATTTAGTCCTTCAATTGGATATGCTAAAAAAGGAAACTTCAATAGCCCCATTTTCTGAAATGCTATTAGGAGCATTAAGAACACATCAACAACTTGTGGTTTTAATAGAAAATGTTGATTTTGCTGATACCCATTTCATGAAATTTCTCTCTGATGGATATGAAAAAGGAAAGTTTGAAACTTTAAGTAGCAAAGAAGGGAATTTAGGtcaaataatattcatattgaCAAAAGGTGGATCCACAAGCATTGAAGAGAAGAACAAAAAACCTGTTATCAATTTGTTATGGCAAATCAGTGAAATTAAACCTAATTTCTTGAGCCCCAAGAGAAAAGCTGAATTGGATTTGTTTTCTAAAATCAAGAACCCTAGAATTGAAGAGAATGAAAAGGGGTTGTTGATTTCTGAACAAGGAAGCAAAAAGACAGAATTTTTAAGACAATCAAGCTTTAACAGTAACCCTAACAGTAACACCCTTGATCTGAACATGaaagttgatgaagaagatgGTGAAGATAAAGAAAAAAGGGAAAGTAGCTCAATTTCAAGTGATTTGACTAGAGAAGCTATGGTTAATCCATTGAACTCAAATGGGTTTCTTGATTCAATTGAGAACAAGTTTGAGTTTAACACAAATTCAGATAAAGACAGAGAAAAGACAGAATTTTTTCTGTTTAAAATCAAAGGGTCATTTGAAGATGTTTGTGGTAAGAAAAATGTGGTGAATTTAAGTGTAGATGAAAAAGTGATTGAAGAAATGTGTTTGGGGTGTTGTTTTTTCACTAACAAAATGTTTGAGAAATGGCTAAAAGACATTTTTCAAAGCAGTTTAGAAACAGTTAACTTTGGAGGGAAGAAAGGTATACATTTTAGGCTTTGTTTGGGTGATAGAAATTGGGATAGTGGGTTTATGGGTTCTTCTCTACCTAAGAGTATTCAAGTTAACTACTTGGTAGAGTAA 2502 0.3573 MRSGGCALQQTLTAEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKRACLKSHQPHHQTSQHPLQSRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGSIEQQQQQQQQQTVLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSCSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRETINLSSFRQNHFMAATTSAKYNSSEFNSVLFSPPKRTELMNTSTGLGLTLHSSSSVLDSKITISQNQSHHMLETKPFCSNKELEDKLNCCEECASNYEKEAQFLKPEQKKTLPFWLQSHGTEEQKKDGLTELKRKWNRLCHCLHQNKQHQNHWNWSNNNSSNPNNSSSSLSYSSNLTPRFRRQQSCSTIEFSFNDNRQATEPFLASLASMEGKEVKISLTLGNGDSSEKVGNITDTKLQQAHVCKLLQENVPWQSETIPSIAKALTDTKSTKQSETIFTWFVLQGNDFTGKRRLTLAIAESVFGSADLVLQLDMLKKETSIAPFSEMLLGALRTHQQLVVLIENVDFADTHFMKFLSDGYEKGKFETLSSKEGNLGQIIFILTKGGSTSIEEKNKKPVINLLWQISEIKPNFLSPKRKAELDLFSKIKNPRIEENEKGLLISEQGSKKTEFLRQSSFNSNPNSNTLDLNMKVDEEDGEDKEKRESSSISSDLTREAMVNPLNSNGFLDSIENKFEFNTNSDKDREKTEFFLFKIKGSFEDVCGKKNVVNLSVDEKVIEEMCLGCCFFTNKMFEKWLKDIFQSSLETVNFGGKKGIHFRLCLGDRNWDSGFMGSSLPKSIQVNYLVE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04565 833 SUPERFAMILY Double Clp-N motif 12 170 IPR036628 -
Tsu04g04565 833 MobiDBLite consensus disorder prediction 676 696 - -
Tsu04g04565 833 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Tsu04g04565 833 Coils Coil 287 307 - -
Tsu04g04565 833 MobiDBLite consensus disorder prediction 358 381 - -
Tsu04g04565 833 MobiDBLite consensus disorder prediction 661 675 - -
Tsu04g04565 833 PANTHER PROTEIN SMAX1-LIKE 5 1 196 - -
Tsu04g04565 833 PANTHER PROTEIN SMAX1-LIKE 5 250 810 - -
Tsu04g04565 833 Gene3D - 431 663 IPR027417 -
Tsu04g04565 833 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 196 - -
Tsu04g04565 833 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 250 810 - -
Tsu04g04565 833 MobiDBLite consensus disorder prediction 661 701 - -
Tsu04g04565 833 Gene3D - 9 175 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04565 Tsu-Chr4 53257624 53261420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04565 - - aprc:113853131 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04565 04 53257624 53261420 Tsu04g04565 04 53257624 53261420 ECH
Tsu04g04565 04 53257624 53261420 Tsu08g02719 08 41645497 41650541 PCT