Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02705 ATGTATGAAATGCAACAATTTCAACTTCACCATCAACATAATAATCAGTTTACGGTGAAGATTGATATGACGAAAAAAAGAGAGAGGAAAAAATCCACGGAGGAGGGAGAGAGGCGTCATGTTGTTGACTTGAGTGGTATGTCTTTGGAGTCGCTGCCCAAATCTTCGCTTCATTTGGCTATTATTAGTAAGCTTGATCTATCTAATAACAATCTCcagAAAATTCCTGAGTCCTTAACGGCAAGATTACTGAACTTGGAGGTGTTGGATGTTCACTCCAACCAGCTCAGATCCCTACCCAACTCCATTGGCTGTCTCTCTAAACTCCAAGTTTTGAATGTTTCTGGCAACTTCATTGAATCCCTTCCCTCAACCATTGAGAATTGCAGAGACTTAGAAGAACTGAATGTCAATTTCAACAACTTGAGCAAGCTACCAGACACAATAGGCTTTGAGCTCATAAAACTGATGAAACTTTCGGTCAATTCCAACAAGTTGGTGTTTCTTCCTAGCTCCACCTCTCATCTAACAGCTCTAAGGGTTCTCGATGTGCGCCTAAACTGCCTCAGGAGTCTCCCTGACGACCTTGAGAATCTCATCAACCTTGAGACCCTAAATGTGAGTCAGAACTTCCAATATTTGGAGTCCTTACCCTACTCCATAGGTCTCCTCTTATCCCTGGTTGAATTGGACGTTAGCTacaacaatattaaaaatttgcCTGACTCAATTGGGTGCCTCCAGAAGCTTCAGAAGCTAAGTGTGGAGGGGAACCCGCTTATTTCACCTCCACCGGAGGTGGTGGAGCAGGGATTGCATGTGGTGAAAGAGTATATGTGTGACAAAATGAACTCAAGCCATCATATCCCAACCAAGAAGAGATGGTGGATGGTGAAATGCGGAACCTTCAATGGACATATGAAAAGTGGGAAACGACCAGAGCATAAGGGTTTCAGTATGCTTCAGTATCAACCCATGAACGGTCTTGCTTCACCAGGCTTCATGGGGAGGTTCTCACCTCTTCGCCTCTTCTCACCCCACCATTCCATCGGTTAA 1056 0.4337 MYEMQQFQLHHQHNNQFTVKIDMTKKRERKKSTEEGERRHVVDLSGMSLESLPKSSLHLAIISKLDLSNNNLQKIPESLTARLLNLEVLDVHSNQLRSLPNSIGCLSKLQVLNVSGNFIESLPSTIENCRDLEELNVNFNNLSKLPDTIGFELIKLMKLSVNSNKLVFLPSSTSHLTALRVLDVRLNCLRSLPDDLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDVSYNNIKNLPDSIGCLQKLQKLSVEGNPLISPPPEVVEQGLHVVKEYMCDKMNSSHHIPTKKRWWMVKCGTFNGHMKSGKRPEHKGFSMLQYQPMNGLASPGFMGRFSPLRLFSPHHSIG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02705 351 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 345 - -
Tsu08g02705 351 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
Tsu08g02705 351 Pfam Leucine rich repeat 63 117 IPR001611 GO:0005515
Tsu08g02705 351 Pfam Leucine rich repeat 155 210 IPR001611 GO:0005515
Tsu08g02705 351 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 345 - -
Tsu08g02705 351 Gene3D Ribonuclease Inhibitor 2 150 IPR032675 -
Tsu08g02705 351 Gene3D Ribonuclease Inhibitor 151 279 IPR032675 -
Tsu08g02705 351 SMART LRR_bac_2 106 125 - -
Tsu08g02705 351 SMART LRR_bac_2 153 172 - -
Tsu08g02705 351 SMART LRR_bac_2 83 102 - -
Tsu08g02705 351 SMART LRR_bac_2 176 195 - -
Tsu08g02705 351 SMART LRR_bac_2 129 148 - -
Tsu08g02705 351 SMART LRR_bac_2 224 243 - -
Tsu08g02705 351 SMART LRR_bac_2 59 78 - -
Tsu08g02705 351 SMART LRR_bac_2 199 220 - -
Tsu08g02705 351 ProSiteProfiles Leucine-rich repeat profile. 85 106 IPR001611 GO:0005515
Tsu08g02705 351 SUPERFAMILY L domain-like 38 269 - -
Tsu08g02705 351 ProSiteProfiles Leucine-rich repeat profile. 226 247 IPR001611 GO:0005515
Tsu08g02705 351 SMART LRR_typ_2 247 270 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 83 105 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 153 175 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 130 152 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 106 129 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 224 246 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 59 82 IPR003591 -
Tsu08g02705 351 SMART LRR_typ_2 176 199 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02705 Tsu-Chr8 41275449 41278389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02705 65 340 Receptor kinase-like Gene Family AT5G51350 30.345 4.15e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02705 - - gmx:100776295 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04557 04 53196629 53200045 Tsu08g02705 08 41275449 41278389 PCT