Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04557 ATGTTGTATGAACAACAACAACGGTTACAGCAACCGTTGATAAAGACATCAGAGAGGAGCAAATATAATCCTAATTCCATAGAAGAAGGTGAGAGGCTTCAAATAATTGATTTGAGTGGCATGTCCTTGGACTCTCTTCCCAACCCTTCTCTTAATTTAGCTACCATTTGCAAATTGGACCTCTCCAACAACAATCTtcagAATATTCCAGAGTCATTAACGGCGAGACTGCTGAACATAGTGGTGTTGGATGTGCACTCAAACCAACTTAGGTCCCTCCCAAACTCCATTGGCTGCCTCTCTAAGCTCAAGCTTTTGAATGTCTCTGGCAACCTCCTCCACCTCCTTCCCAAGACAATTGAGAATTGCAGGGCCTTGGAAGAgttgaatttaaatttcaacaagTTGATTCAGCTACCAGAAACAATAGGATACGAGCTACTAAACCTAAAGAAGTTATCAATCAACTCCAACAAATTACTTTTCCTTCCACGCTCCATCTCTTATCTCACATCTCTAAAGATTCTCGACGCACGCCTCAACTGTCTAAGGTCTCTCCCAGAAGACCTCGAGAATCTTGTCAACCTTGAAATCCTAAATGTGAGTCAAAACTTTCAGTACTTGGATTCTATCCCTGACTCCATAGGACTTCTCTTGTCCCTTGTTGAACTTGACATTAGCTACAACAAGATCAAGTACTTACCAGATTCACTTGGTTGCCTCAATAAGCTTCAAAAGCTATGTGTGGAAGGGAATCCACTTAGTTCACCACCACCAGAAGTTGTAGAGCATGGATTGCATGCAGTGAAGGAGTATTTGTGCAGTAAGATGAATGCTGGTCATCAAATTCCAGTTAAGAAGAAGTCATGGGTTGGAAGATTGGTTAAGTATGGAACCTTTAATGTTAGAAATGGTGCTCGCGAAGAACGCGAGGCTTTCATTCTCCCTGATTATACTAGATCTATTGATGGTCTCGCTTCTCCCCGTTATATGGGGATGTTTTCACCACGCCGTCTCTTCTCCTATCGTAATTACTTCAACAATTGA 1047 0.4117 MLYEQQQRLQQPLIKTSERSKYNPNSIEEGERLQIIDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNIVVLDVHSNQLRSLPNSIGCLSKLKLLNVSGNLLHLLPKTIENCRALEELNLNFNKLIQLPETIGYELLNLKKLSINSNKLLFLPRSISYLTSLKILDARLNCLRSLPEDLENLVNLEILNVSQNFQYLDSIPDSIGLLLSLVELDISYNKIKYLPDSLGCLNKLQKLCVEGNPLSSPPPEVVEHGLHAVKEYLCSKMNAGHQIPVKKKSWVGRLVKYGTFNVRNGAREEREAFILPDYTRSIDGLASPRYMGMFSPRRLFSYRNYFNN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04557 348 PANTHER LEUCINE-RICH REPEAT-CONTAINING 17 341 - -
Tsu04g04557 348 SMART LRR_bac_2 170 189 - -
Tsu04g04557 348 SMART LRR_bac_2 123 142 - -
Tsu04g04557 348 SMART LRR_bac_2 147 166 - -
Tsu04g04557 348 SMART LRR_bac_2 77 96 - -
Tsu04g04557 348 SMART LRR_bac_2 193 214 - -
Tsu04g04557 348 SMART LRR_bac_2 100 119 - -
Tsu04g04557 348 SMART LRR_bac_2 53 72 - -
Tsu04g04557 348 SMART LRR_bac_2 218 237 - -
Tsu04g04557 348 ProSiteProfiles Leucine-rich repeat profile. 55 76 IPR001611 GO:0005515
Tsu04g04557 348 SUPERFAMILY L domain-like 21 266 - -
Tsu04g04557 348 SMART LRR_typ_2 170 193 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 218 240 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 124 146 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 77 99 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 100 123 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 53 76 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 241 264 IPR003591 -
Tsu04g04557 348 SMART LRR_typ_2 147 169 IPR003591 -
Tsu04g04557 348 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 17 341 - -
Tsu04g04557 348 Gene3D Ribonuclease Inhibitor 2 145 IPR032675 -
Tsu04g04557 348 Gene3D Ribonuclease Inhibitor 146 274 IPR032675 -
Tsu04g04557 348 Pfam Leucine rich repeat 58 113 IPR001611 GO:0005515
Tsu04g04557 348 Pfam Leucine rich repeat 207 254 IPR001611 GO:0005515
Tsu04g04557 348 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04557 Tsu-Chr4 53196629 53200045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04557 52 261 Receptor kinase-like Gene Family AT1G28440 31.193 1.63e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04557 - - cam:101513208 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04557 04 53196629 53200045 Tsu04g04557 04 53196629 53200045 ECH
Tsu04g04557 04 53196629 53200045 Tsu08g02705 08 41275449 41278389 PCT