LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g02669	ATGCAAAAATTCACTGCTAAGATTGTTAGTCTTATGAAATCAGAGAGTTTGTTTCAAAATCAAGGTGGTCCCATCATTTTGTCTcagATTGAGAATGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTACACCAAATGGTTTTCTCAAATGGCTGTAGGGCTAGATACCGGTGTGCCGTGGATTATGTGTAAGCAGGAAGATGCTCCTGATCCTATTATTGATACCTGCAATGGATATTACTGTGAAAACTTCTTTCCCAACAAGAATTACAAACCGAAAATGTGGACCGAAAATTGGTCCGGCTGGTACACTGATTTCGGTAGTGCTGTCCCTTATAGACCAGCAGAAGACTTAGCATTCTCAGTTGCTAGATTCATACAAAATCGCGGCTCATATGTTAACTACTATATGTTCCATGGAGGAACTAATTTTGGAAGGACATCTAGTGGCCTTTTTATTGCCACGAGTTACGACTATGATGCTCCTATTGATGAATACGGACTTACAAATGAACCAAAATATACACATCTAAGTAATTTACACAAAGCAATAAAGCAATGCGAATCGGCTTTAGTGTCTGTGGATCCGACAGTGTCATGGCCTGGAAAAAACCTTGAGGTACACGTTTACAAGACAAGTTTTGGTGCCTGTGCTGCATTCCTTGCAAATTACAACACCGGAACGTGGGCTAAAGTTCCATTTGGAAATGGCCAATACGATCTACCGCCTTGGTCTGTCAGTATTCTTCCTGATTGCAAAACTGAGGTTTATAACACCGCAAAGGTTCGTGCACCAAGGTTCCATAGAAAGATGACTCCGGTGAGCTCATTTGCTTGGCAGTCGTACAACGAACAACCTGCTGCCTCAGGTGGAAGTGATTCCTTCACAGCAAATTCACTTTTGGAGCAAGTCAATGTGACTCGTGATTCGTCAGATTATTTGTGGTATATGACAGATGTCAACATTAGTCCTAATGAAGCTTTTTTAAAGAATGGTCAATCTCCTGTTCTCACTGCAATGTCGGCCGGCCATGTTCTGCATGTTTTTGTTAATGGTCAATATTCAGGCACTGCATATGGATCATTGGAGAATCCTAAATTAACATTTACTGGTAATGTTAAGATGTGGGTTGGCAATAACAAAATTTCTCTACTTAGTGTTGCCGTCGGTCTCTCGAATGTTGGCATCCACTATGAAACATGGAATGTTGGCGTGTTAGGTCCGGTAACATTGAAAGGTTTAAACGAGGGGACAAGAGACTTGTCTCGACAAAAATGGTCTTACAAGACTGGACTGAAAGGTGAAGCCTTGAACCTTCCTACCGGAAATGCCGCTGTTAGATGGGCACAAGGGCCATCATTGTCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTCAGCGCACCGGCCGGAAATGATCCATTGGCTCTAGATGTAGGTAGCATGGGAAAGGGTGAAATATGGGTAAATGGTAAGAGCATTGGTCGTCATTGGCCTGGATATATAGCTCGTGGTAATTGCGGTGGTTGTAATTATGCCGGAACATTTACCGATAAAAAATGCCGAACAAGTTGTGGACAACCTACCCAAAAATGGTAA	1617	0.4205	MQKFTAKIVSLMKSESLFQNQGGPIILSQIENEYGPVEWEIGAPGKAYTKWFSQMAVGLDTGVPWIMCKQEDAPDPIIDTCNGYYCENFFPNKNYKPKMWTENWSGWYTDFGSAVPYRPAEDLAFSVARFIQNRGSYVNYYMFHGGTNFGRTSSGLFIATSYDYDAPIDEYGLTNEPKYTHLSNLHKAIKQCESALVSVDPTVSWPGKNLEVHVYKTSFGACAAFLANYNTGTWAKVPFGNGQYDLPPWSVSILPDCKTEVYNTAKVRAPRFHRKMTPVSSFAWQSYNEQPAASGGSDSFTANSLLEQVNVTRDSSDYLWYMTDVNISPNEAFLKNGQSPVLTAMSAGHVLHVFVNGQYSGTAYGSLENPKLTFTGNVKMWVGNNKISLLSVAVGLSNVGIHYETWNVGVLGPVTLKGLNEGTRDLSRQKWSYKTGLKGEALNLPTGNAAVRWAQGPSLSKKQPLTWYKTTFSAPAGNDPLALDVGSMGKGEIWVNGKSIGRHWPGYIARGNCGGCNYAGTFTDKKCRTSCGQPTQKW	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g02669	538	Pfam	Beta-sandwich domain in beta galactosidase	196	267	IPR041392	-
	Tsu08g02669	538	PANTHER	BETA-GALACTOSIDASE	1	538	-	-
	Tsu08g02669	538	SUPERFAMILY	Galactose-binding domain-like	251	420	IPR008979	-
	Tsu08g02669	538	SUPERFAMILY	Galactose-binding domain-like	430	538	IPR008979	-
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	463	477	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	490	506	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	136	151	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	156	172	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	20	35	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PRINTS	Glycosyl hydrolase family 35 signature	99	114	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	PANTHER	BETA-GALACTOSIDASE RELATED	1	538	IPR001944	GO:0004553\|GO:0005975
	Tsu08g02669	538	ProSitePatterns	Glycosyl hydrolases family 35 putative active site.	22	34	IPR019801	GO:0004553\|GO:0005975
	Tsu08g02669	538	Gene3D	Glycosidases	1	192	-	-
	Tsu08g02669	538	Pfam	Glycosyl hydrolases family 35	1	188	IPR031330	-
	Tsu08g02669	538	Gene3D	-	437	512	-	-
	Tsu08g02669	538	SUPERFAMILY	(Trans)glycosidases	2	193	IPR017853	-
	Tsu08g02669	538	Gene3D	-	296	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g02669	Tsu-Chr8	40656071	40661745	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g02669	1	538	Glycoside Hydrolase	AT3G52840	64.695	0.0	756

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g02669	-		-	gmx:100781959	906.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g02669	08	40656071	40661745	Tsu08g02669	08	40656071	40661745	ECH
	Tsu04g04536	04	53037577	53043629	Tsu08g02669	08	40656071	40661745	PCT