Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04536 ATGGAGAATTTTGTTAGGAGAAAATTATTTATCTTACTATTATTGCTTGTGTGGGTTTGTTCAGTCACTGCCTCAGTGACTTATGATCACAAGGCCATTCTTGTTAATGGACAGAGAAGACTTTTATTTTCTGGGTCCATTCATTATCCAAGAAGTACACCTCAGATGTGGCCAGACCTTATTCAAAAGGCTAAAGATGGAGGCTTAGATGTTATACAAACTTATGTATTTTGGAATGGACATGAACCTTCTCCTGGTCagtattattttgagGATAGGTACGATTTGATTAAGTTCATCAAGATGGTGCAACAAGCTGGCCTTTTTGTTCATCTACGCATTGGTCCCTACGCATGTGCTGAATGGAACTTGGGGGGATTTCCAGTTTGGCTTAAGTATGTCCCGGGTATTGCATTCAGAACAGACAATGAACCTTTCAAGGCGGCAATGCAAAAATTTACTACTAAGATTGTCGACATGATGAAGGCAGAGAGATTGTTTCAAACGCAGGGAGGTCCAATAATTTTGTCTCAGATAGAGAATGAGTATGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAAAGCTTACACGAAATGGTTTGCTCAAATGGCTGTAAGTTTAGATACTGGTGTACCATGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTATTATTGATGCTTGCAATGGTTACTACTGTGAAAACTTCAAGCCCAACAAGGAATCCAAACCTAAAATGTGGACTGAGAATTGGACTGGCTGGTACACAGAGTTTGGTGGTGCAGTTCCACGTAGATCAGCAGAAGACATAGCATTCTCTGTTGCAAGATTTGTACAAAATGGTGGCACATTTGTTAACTACTATATGtATCATGGAGGAACTAACTTTGATAGAACATCTGGTGGACCCTTCATTGCTACAAGCTATGACTTTGATGCTCCCCTTGATGAATTTGGACTTTTGAACCAACCAAAATGGGGGCATTTAAATGATTTACATAAAGCAATTAAGCTATGTGAAAAAGCTTTATTGTCTGTTGATCCCACAGTAACATGGCCAGGAAAAAATCTAGAGGTACATGAATTCAAGACAAATACCGGTGTTTGTTCTGCATTCCTTGCGAATTATGATACCAAATATGCGGCAACAATTAAATATGGAGACGGACAATATGAACTGCCACCTTGGTCTGTTAGCATTCTTCCTAACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTACTCAAAGTTCCTTAATGAAGATGACTGCTGCAAACAGTGCATTTTCTTGGCAGTCATATAATGAAGAACCGGCATTTTCCAATGAACACGATTCCATGACAGCATATGCATTATGGGAGCAGATAAATGTCACCCGAGATTCTACTGATTATTTGTGGTACATGACTGATGTCAACATTGATCCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTCTTCTTACAATAATGTCAGCAGGTCATGCTATGCATGTATTCATTAATGGTCAACTTTCAGGTACTGTGTATGGGTCATTGGAGTTCCCTAAATTAACATTTAGTCAGAATGTTAAGCTAAGGGTTGGAAATAACAAGATCTCTTTACTTAGTATTAGTGTCGGTCTCGCAAATGTAGGTGTGCACTTTGAAACATGGAATGTCGGGGTGTTAGGCCCGGTCACACTCAAGGGACTAAACGAGGGTACCAGAGACTTGTCTCGACAGAAATGGTCTTACAAGATTGGTCTTGAGGGTGAAGCCTTAAAACTTCACACTCTAAGTGGAAGCACAAAAGTTAGATGGGCAGAAGGATCATTATTGGCTATAAGAAAACCTTTGACATGGTACAAGACATCTTTTAGAACACCAGCAGGGAATGATCCATTAGCTCTAGATATGAGCAGTATGGTAAAGGGTCAAGTATGGATAAATGGTCGGAACATCGGACGCCATTGGCCAGGATATAAAGCACGTGGTAAATGTGAGGAATGTTACTATGCCGGAACTTATACCGAAACAAAATGTCGGACGAATTGTGGACAACCCTCACAGAAATGGTACCATGTTCCTAGGTCATGGTTGAGCCCAAGTGGCAACTATTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTAATGGAATATCCTTGGTGAAAAGAACAACAGGAAGTGTTTGTGCTGATATATATGACCATCAGCCAACACTTAGGAACAGTGTTAATAGAGTAGCTGACTTATGGTGTCCCATTGGACAAAAGATCTCCCAAATTAAATTTGCTAGCTATGGATGGCCACAAGGAACTTGTGGAAACTATAGAGAGGGGAGTTGTCATGCTCACAAATCATATGATGCTCCTCAAAGGGACTGCATTGGGAAGCAATATTGCATGGTAACTGTAACTCCTGAAAATTTTGGGGGAGACCCATGTCCAGGAACTGCAAAGAAGTTCTCGGTTGAGGCCCTATGCAGCTAG 2484 0.4074 MENFVRRKLFILLLLLVWVCSVTASVTYDHKAILVNGQRRLLFSGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGQYYFEDRYDLIKFIKMVQQAGLFVHLRIGPYACAEWNLGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTTKIVDMMKAERLFQTQGGPIILSQIENEYGPVEWEIGAPGKAYTKWFAQMAVSLDTGVPWIMCKQEDAPDPIIDACNGYYCENFKPNKESKPKMWTENWTGWYTEFGGAVPRRSAEDIAFSVARFVQNGGTFVNYYMYHGGTNFDRTSGGPFIATSYDFDAPLDEFGLLNQPKWGHLNDLHKAIKLCEKALLSVDPTVTWPGKNLEVHEFKTNTGVCSAFLANYDTKYAATIKYGDGQYELPPWSVSILPNCKTAVFNTARLGTQSSLMKMTAANSAFSWQSYNEEPAFSNEHDSMTAYALWEQINVTRDSTDYLWYMTDVNIDPNEGFIKNGQSPLLTIMSAGHAMHVFINGQLSGTVYGSLEFPKLTFSQNVKLRVGNNKISLLSISVGLANVGVHFETWNVGVLGPVTLKGLNEGTRDLSRQKWSYKIGLEGEALKLHTLSGSTKVRWAEGSLLAIRKPLTWYKTSFRTPAGNDPLALDMSSMVKGQVWINGRNIGRHWPGYKARGKCEECYYAGTYTETKCRTNCGQPSQKWYHVPRSWLSPSGNYLVVFEEWGGDPNGISLVKRTTGSVCADIYDHQPTLRNSVNRVADLWCPIGQKISQIKFASYGWPQGTCGNYREGSCHAHKSYDAPQRDCIGKQYCMVTVTPENFGGDPCPGTAKKFSVEALCS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04536 827 Gene3D - 739 827 IPR043159 -
Tsu04g04536 827 Gene3D - 577 731 - -
Tsu04g04536 827 SUPERFAMILY (Trans)glycosidases 25 342 IPR017853 -
Tsu04g04536 827 Pfam Beta-sandwich domain in beta galactosidase 345 415 IPR041392 -
Tsu04g04536 827 ProSiteProfiles SUEL-type lectin domain profile. 741 827 IPR000922 GO:0030246
Tsu04g04536 827 SUPERFAMILY Galactose-binding domain-like 580 742 IPR008979 -
Tsu04g04536 827 SUPERFAMILY Galactose-binding domain-like 400 570 IPR008979 -
Tsu04g04536 827 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Tsu04g04536 827 Pfam Galactose binding lectin domain 749 826 IPR000922 GO:0030246
Tsu04g04536 827 Gene3D - 433 576 - -
Tsu04g04536 827 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Tsu04g04536 827 PANTHER BETA-GALACTOSIDASE 4 821 - -
Tsu04g04536 827 PANTHER BETA-GALACTOSIDASE RELATED 4 821 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 Gene3D Glycosidases 19 341 - -
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Tsu04g04536 827 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04536 Tsu-Chr4 53037577 53043629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04536 1 827 Glycoside Hydrolase AT3G13750 67.182 0.0 1197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04536 - - gmx:106795462 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04536 04 53037577 53043629 Tsu08g02669 08 40656071 40661745 PCT