Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02646 ATGTCTCAAAATTACCCTTTTCCAATATACTTCATTCTCTTAATAATAACCATACCACGTTTAATATCAACCGTAGGTAAAACCGAACAATGGAAAAAACCATCACTACCAATAGAATTATCCTTATCCACAAACAACATCATAtcacaaaaactcataaacaacCCAAAAGCCATTGAAAAAGCTTCAAGTGATTATGGTAACCTCGTACATGATTTACCAGCAGCAGTATTTAATCCAACAACGGTAAACGACATAGTAAGTCTTATAAAATTGTCGTTTAATAGTTCTGTCTCTTTTCATATAGCTGCAAAAGGACAAGGACATTCCACGCGCGGACAAGCTATGGCACGTGATGGTGTCGTAGTTGATATGAAAGaattaagagaaaataaaaaaaataaaaaaaatgttgatgggATTAAGGTTTTTGAAGATTCTAAGGTTGGTTACTATGTTGATGTTGGAGGTGAACAATTATGGATTGATGTTTTATATCAAACACTTGAATATGGACTTGCACCTGTTTCTTGGACTGATTATCTTTACTTAACTATTGGTGGAACACTCTCTAATGCTGGTATTAGTGGTCAAACATTTCGTTATGGTCCTCAAATTACTAGTGTTCATCAATTAGATGTTGTCACAGGAAAAGGAGAATTTGTAACATGCTCTAAACAGAACAATTCAGAATTATTTCATGGAGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGGGCAAGAATTGCTCTTGAGCCAGCACCAAAGAGGGTTAAATGGGTAAGACTATTGTATAGTGATTTTGGTGCATTTACAAAAGACCAAGAACGTTTAATTTCAATGAAAggaattaagaaaaatagtggATTGGATTATTTGGAAGGGATGTTATTAATGCATCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTATCCGACCATCACACAATACTTTCCCTAGTAACACAACATAGGGTCCTCTATTGCTTGGAAATTGCTAAATATTATGATGACTATTCTGAAAACAATGTCAACAAGGAAATTCAAGTGTTGCTCCAAGGACTGAGCTATATCCCTGgattttattatgaaaaaaatgtatCATTTGTTGAGTTTTTGAATAGAGTAAGAAGTGGAGAGTTGAAGCTTCAATCACAAGGATTTTGGGATGTTCCTCATCCATGGCTTAATATGTTTATACCAAAATCTagaattttggattttaattcAGGTGTCTTTATGAAGATAATTCAAAAAAGAAACATCACCACAGGACCTGTCTTAGTTTATCCCATGAATAGAAACAAgTGGGACAATAAGATGTCAGCAATAATAccagatgatgaagatgatatcTTCTATACTGTTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAAGCATTTGATGCTCAAAACAGAGAAATTTTGCAATTTTGTGATGATGCTGAAATTAAGTATAAGCTATATCTTCCCCACTACAGCACACAAGAAGAGTGGACAAACCATTTTGGTCCTAAAAAATGGAAAACttttttacaaagaaaataTGAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAGAATCTTCAACAACAATTAA 1626 0.3143 MSQNYPFPIYFILLIITIPRLISTVGKTEQWKKPSLPIELSLSTNNIISQKLINNPKAIEKASSDYGNLVHDLPAAVFNPTTVNDIVSLIKLSFNSSVSFHIAAKGQGHSTRGQAMARDGVVVDMKELRENKKNKKNVDGIKVFEDSKVGYYVDVGGEQLWIDVLYQTLEYGLAPVSWTDYLYLTIGGTLSNAGISGQTFRYGPQITSVHQLDVVTGKGEFVTCSKQNNSELFHGVLGGLGQFGIITRARIALEPAPKRVKWVRLLYSDFGAFTKDQERLISMKGIKKNSGLDYLEGMLLMHQGPINNWRSSFFPLSDHHTILSLVTQHRVLYCLEIAKYYDDYSENNVNKEIQVLLQGLSYIPGFYYEKNVSFVEFLNRVRSGELKLQSQGFWDVPHPWLNMFIPKSRILDFNSGVFMKIIQKRNITTGPVLVYPMNRNKWDNKMSAIIPDDEDDIFYTVGFLHSSGFDNWKAFDAQNREILQFCDDAEIKYKLYLPHYSTQEEWTNHFGPKKWKTFLQRKYEFDPRMILSPGQRIFNNN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02646 541 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 256 IPR016166 GO:0071949
Tsu08g02646 541 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 255 IPR036318 GO:0050660
Tsu08g02646 541 Gene3D - 125 258 IPR016169 -
Tsu08g02646 541 SUPERFAMILY FAD-linked oxidases, C-terminal domain 257 539 IPR016164 GO:0003824|GO:0050660
Tsu08g02646 541 Gene3D - 259 496 IPR016170 -
Tsu08g02646 541 PANTHER CYTOKININ DEHYDROGENASE 3 18 539 - -
Tsu08g02646 541 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Tsu08g02646 541 Gene3D - 56 538 IPR016167 -
Tsu08g02646 541 Pfam FAD binding domain 74 225 IPR006094 GO:0050660
Tsu08g02646 541 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 257 538 IPR015345 GO:0009690|GO:0019139|GO:0050660
Tsu08g02646 541 PANTHER GULONOLACTONE OXIDASE 18 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02646 Tsu-Chr8 39968229 39974930 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02646 K00279 - gmx:100797928 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04528 04 52960021 52965286 Tsu08g02646 08 39968229 39974930 PCT