Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04528 ATGACTAAAACTTACCCTTTTTTCACTAATTTCATACTTCTACTATTATTAATAACCACACCCTGTTTAAAATCCACCGTAGGTAAAACAGATCAATGCAAAATTCTGCTACCACCCGAGCTTGCGAATTTCGACAGTACTATATCGAACAAACTCCATAGCGACCCTGAAACAATCAAAATTGCATCTAGTGACTATggaaacataattcaagaattCCCAAAAGCAGTGTTTCATCCATCTTCAATACAAGACATAATAACCTTAATTAAAATCTCAAACAATAGCTCTGTTCCTTTCAATATAGCAGCTAGAGGACAAGGTCACTCTACGAATGGACAATCCATGGCACGTGATGGGGTTGTAGTTGACATGGCTAGTTtcagaaaacaaagaaaagggGTTGCAATTAGTGTCTCTGAAGACCCTTTGATTGGTTACTATGTTGATGTTGGAGGAGAACAGCTATGGATTGATGTTTTGTATGAAACACTCCAACATGGACTTGCACCGGCTTCTTGGACTGATTATCTTTATCTGACGGTTGGAGGAACACTTTCCAATGCTGGAATTAGTGGCCAGACCTTTAGATATGGACCTCAAATCTCCAACGTTCATGAATTGGATGTGATTACAGGAAAAGGAGATTATGTAACTTGCTCTTATGAGAAGAATTCAGAGTTATTTCACGCGGTTCTTGGAGGTTTAGGACAATTTGGAGTTATAACAAGGGCAAGAATTTCTCTTCAGCCAGCTCCCACAACGGTTAAGTGGATTAGATTGCTTTATAGTGATTTCTCTGCTTTTACTAAAGACCAGGAACGATTAATCTCAATCAAAGGAAGGAAGCAAAATATTGAATTGGATTTTTTGGAAGGGATGTTGCTAATGCAACAAGGGTCCATAAATAATTGGAGATCCTCTAATTTCTTCCCTCTATCTGATCATTCAATAATAGCTTctttaataaataaacacaGCATTCTCTACTGCCTTGAGTTGGTTAAATATTACGATGATCAATCTGAGAACATGGTGGACAAGGAAATTCAAGTTTTGCTACAAGGACTAGCCTATATCCCTGGACTTCATTATGAGAAAAATGTACCTTATGTTGAATTCTTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTTCAATCACAAGGACTATGGGATGTTCCTCACCCATGGCTCAATTTATTTGTACCAAAATCtcaaatcttggattttaattCAGGCATATTCAAGGATATAATTCTTAAAAGAAACATCACCAATGGAAATGTCTTGGTTTATCCCATGAATAAAAGCAAGTGGGATGATAGAATGTCAACAATTACACCAAATGAGGATGTGTTCTATGCAGTTGGATTTTTACACTCAAGTGGATTTAATAATTGGAAAGAATATGAAGctcaaaacaaagaaattttgGAGTTTTGTAGTGATGTTGGCATTAAAGTTAAGCAATATCTTCCCAACCACAGCACACAGGAAGATTGGGAAAAACATTTTGGCAATAAATGGATGAAATTCTTGGaaagaaaacatcaatttgATCCTAGAATGATTCTATCACCTGGACAAAAAATCTTCAACAACAATTGA 1608 0.3464 MTKTYPFFTNFILLLLLITTPCLKSTVGKTDQCKILLPPELANFDSTISNKLHSDPETIKIASSDYGNIIQEFPKAVFHPSSIQDIITLIKISNNSSVPFNIAARGQGHSTNGQSMARDGVVVDMASFRKQRKGVAISVSEDPLIGYYVDVGGEQLWIDVLYETLQHGLAPASWTDYLYLTVGGTLSNAGISGQTFRYGPQISNVHELDVITGKGDYVTCSYEKNSELFHAVLGGLGQFGVITRARISLQPAPTTVKWIRLLYSDFSAFTKDQERLISIKGRKQNIELDFLEGMLLMQQGSINNWRSSNFFPLSDHSIIASLINKHSILYCLELVKYYDDQSENMVDKEIQVLLQGLAYIPGLHYEKNVPYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFVPKSQILDFNSGIFKDIILKRNITNGNVLVYPMNKSKWDDRMSTITPNEDVFYAVGFLHSSGFNNWKEYEAQNKEILEFCSDVGIKVKQYLPNHSTQEDWEKHFGNKWMKFLERKHQFDPRMILSPGQKIFNNN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04528 535 Gene3D - 255 491 IPR016170 -
Tsu04g04528 535 Gene3D - 125 254 IPR016169 -
Tsu04g04528 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 49 251 IPR036318 GO:0050660
Tsu04g04528 535 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 14 533 - -
Tsu04g04528 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 253 533 IPR016164 GO:0003824|GO:0050660
Tsu04g04528 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 253 532 IPR015345 GO:0009690|GO:0019139|GO:0050660
Tsu04g04528 535 Pfam FAD binding domain 74 221 IPR006094 GO:0050660
Tsu04g04528 535 Gene3D - 55 532 IPR016167 -
Tsu04g04528 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 252 IPR016166 GO:0071949
Tsu04g04528 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Tsu04g04528 535 PANTHER GULONOLACTONE OXIDASE 14 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04528 Tsu-Chr4 52960021 52965286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04528 K00279 - gmx:100787676 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04528 04 52960021 52965286 Tsu04g04528 04 52960021 52965286 ECH
Tsu04g04528 04 52960021 52965286 Tsu08g02646 08 39968229 39974930 PCT