Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02635 ATGGCGAGGCTACTTCGAAGCGCCAACAGTTTTCTATTCAATCGCTCTTTCTTCAACCATGGCCATCCAACGCGCTTTTGCTTCAAAAATGGTGTATTGGGCACACCTTCAGTTTTGAGCTTTTCAACTAATAAAGGTAAGAAGCGCGCTAAATCAGATGGAAGTGACTCGGGTGAAGATAACATGTCTAAGAAAGATTTAGCCCTACAACAAGCCATGGATCAGATCACCTCTACATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTGTCTCACCCAAAAATGTTCCTGTGGTGTCAACTGGTTCTTTTGCTCTTGATATAGCGCTAGGAATCTTTGGTCTTCCAAAGGGGCGTGTTGTTGAAATATTCGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAGGCACAGAAACAAGGAGGCTATTGCGCCTTTATTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATTGGTGTAAATACCGAAAATTTGCTTCTTTCACAGCCAGATTGTGGTGAACAGGCACTTAGCCTTGTGGATACCTTAATTCGGAGTGGTTCAATTGATGTAATTGTTGTCGATAGCGTGGCTGCTCTAGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGATTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAGTgtatattgatttttataaatCAGGTAAGATCGAAGATTTCTACTTTTGGCGGATTTGGAGGGCCTACTGAAGTTACTTGTGGTGGCAATGCATTGAAGTTCTATTCTTCTGTGAGGCTAAATATCAAAAGAATAGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAAGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCGCAGTTTGAGCTTGAATTCGGAAAGGGCATATGTCGAGAAGCAGAGATTATAGAGTTGAGCATAAAacacaaattcataaaaaagagCGGTTCATTTTACGAATACAATGGCAAGAATTTCCACGGCAAGGAAGCACTAAAAAATCACCTGATCAACAGCAACTGTGTACAAGAATTAACAACGAAGCTTAGAGAAAAGCTTCTCAATGCTGAGTCGGAAACAGTTTCGGAATCGCCAGCGATGGACGGAGATGTTATGGAAGAAATGTTATCCCCTGATGAAGAAGCTGCTATTGTTGCAGAAGCTTGA 1272 0.4206 MARLLRSANSFLFNRSFFNHGHPTRFCFKNGVLGTPSVLSFSTNKGKKRAKSDGSDSGEDNMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYNGKNFHGKEALKNHLINSNCVQELTTKLREKLLNAESETVSESPAMDGDVMEEMLSPDEEAAIVAEA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02635 423 SUPERFAMILY RecA protein, C-terminal domain 333 386 IPR023400 -
Tsu08g02635 423 CDD recA 64 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 ProSiteProfiles RecA family profile 2. 265 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tsu08g02635 423 TIGRFAM tigrfam_recA: protein RecA 65 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 Gene3D - 95 395 IPR027417 -
Tsu08g02635 423 MobiDBLite consensus disorder prediction 46 62 - -
Tsu08g02635 423 SMART AAA_5 118 292 IPR003593 -
Tsu08g02635 423 Pfam recA bacterial DNA recombination protein 68 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PANTHER RECA 1 414 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 MobiDBLite consensus disorder prediction 41 62 - -
Tsu08g02635 423 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 331 IPR027417 -
Tsu08g02635 423 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tsu08g02635 423 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu08g02635 423 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu08g02635 423 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02635 Tsu-Chr8 39775496 39782587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02635 K03553 - gmx:100798983 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04523 04 52914485 52919292 Tsu08g02635 08 39775496 39782587 PCT