Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04523 ATGGCGAGGTTGCTTCGGAACACTTCCTTACTCACACGCTCTCTATTCGCCTCTCAGGGTTTGAAAATAGGAGGAGTATCTAGCACTTTTCAGTTATTGAGCTTTTCATCCAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGATAGCATGTCCAAGAAAGATTTGGCCCTCAAGCAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAAGGATCTATCATGTGGCTTGGTCGCTCTGACACACCAAAAGATGTACCAGTAGTGTCTACTGGTTCTTTTGCTTTAGATATAGCACTGGGATGTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTTGACGCCGAGCATGCCCTTGATAAGACACTTGCGGAGTCTATTGGTGTGAATACTCAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGTCTCGTCGACACCTTAATCCGTAGTGGTTCAATTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTAGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGAAAATTGAGCCACTCCTTGTCACTTTCTcaaactatattgatttttataaacCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCGTTGAAATTTTATGCTTCTATGCGGCTTAATATTAAGAGGATAGGGTTTATCAAGAAAGGTGAAGAGGTTGTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAGAGAAGCAGAGATTATAAAGTTGAGCTTAAAATACAAATTCATCACAAAAGCTGGTTCTATGTATTACTATAATGAACATAATTTCCGCGGTGTGGATGCTCTCAAGAGTTTCCTGGCTGAGAATTATAGTGCTTTAGAAGAACTGGAAATGAAGATTAGGGAGAAGCTTTTAAAACCCGAGACAGACAAGGTAGCAGAGTCAAATGGAGATGTTACGGAAGAAATTGCTACTCTTGATTCTACTGACGAAGATACCGCAGCTGTTGTAGAAGCATGA 1254 0.4226 MARLLRNTSLLTRSLFASQGLKIGGVSSTFQLLSFSSKGRRRSKSDGSDSGEDSMSKKDLALKQALDQITSAFGKGSIMWLGRSDTPKDVPVVSTGSFALDIALGCGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGFIKKGEEVVGSQVLVKVVKNKLAPPFKTAEFELQFGKGICREAEIIKLSLKYKFITKAGSMYYYNEHNFRGVDALKSFLAENYSALEELEMKIREKLLKPETDKVAESNGDVTEEIATLDSTDEDTAAVVEA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04523 417 ProSitePatterns recA signature. 270 278 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tsu04g04523 417 TIGRFAM tigrfam_recA: protein RecA 58 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 Pfam recA bacterial DNA recombination protein 61 324 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PANTHER RECA 1 408 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 324 IPR027417 -
Tsu04g04523 417 Gene3D - 88 391 IPR027417 -
Tsu04g04523 417 CDD recA 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 408 - -
Tsu04g04523 417 ProSiteProfiles RecA family profile 1. 89 248 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu04g04523 417 SMART AAA_5 111 285 IPR003593 -
Tsu04g04523 417 SUPERFAMILY RecA protein, C-terminal domain 326 381 IPR023400 -
Tsu04g04523 417 PRINTS RecA protein signature 181 210 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PRINTS RecA protein signature 219 248 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PRINTS RecA protein signature 267 295 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PRINTS RecA protein signature 300 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 PRINTS RecA protein signature 147 176 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 Hamap Protein RecA [recA]. 58 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tsu04g04523 417 ProSiteProfiles RecA family profile 2. 258 329 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04523 Tsu-Chr4 52914485 52919292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04523 K03553 - gmx:100781271 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04523 04 52914485 52919292 Tsu04g04523 04 52914485 52919292 ECH
Tsu04g04523 04 52914485 52919292 Tsu08g02635 08 39775496 39782587 PCT