Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02329 ATGGTTTTGTTTTCTTCTCATAAGAGTACAagtttcttctttgtgtttctATGTGTTGCAGCACTTGGTTCGGTTTTTTTGGTGTGGCAGAGGAATGTGATtaattctttctttgttttgggTGGTGTGGAGGTTCCGGTTTGGGAATCGCCGAAGCTGAGACCTGTGGTTTTCAATTTGGTTGATTTTGGTGGTGTTGGTGATGGTGTTGCTCTTAATACTATGGCTTTTGAAAAAGCTATTTCTGTTATTTCTAAGTTTGAGAATAAGGGTGGTGCTCAGTTGAATGTTCCACCTGGTTTTTGGCTTACTTCACCTTTTAATCTTACTAGTCATATGACTCTTTTTCTAGCTCATGATGCTGTCATTCTTGGAATTCAGGATGAAAGTTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGCATGGTAGGGAGCATCCTGGACCCCGGTATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTAATAACAGGACATAATGGAACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTCCATAAGCTTCTCAACCACACAAGGGGGCCACTTGTTCAGCTCATGTATTCTAGTGACATTGTGATCTCAAATATTACTCTACGCGATTCTCCTTTTTGGACTCTTCATCCATATGACTGCAAGAACGttacaataaaaaatgttaCGATATTAGCACCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTGTGGGGGATGATGCAATTGCGATAAAAAGTGGATGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCTAAGAATATCCTAATCCGAAACCTTGTCGTTCGTTCTAATGTCAGTGCTGGCATCTCAATAGGAAGTGAAATGTCCGGTGGAGTATCCAATGTCACCATCGAGAACATTCTTGTATGGGAATCTAGACGCGCCATGAGGATCAAAACGGCACCAGGTAGAGGAGGATACGTTCGCCAAATAACTTACCGGAATCTAACTTTCCACAATGTCCGTGTTGGAATTGTTATCAAAACCGATTACAACGAACACCCTGACACTGGTTATGACCCTTCAGCTCTTCCAATTCTCAGAGACATAAGTTTCACCCATATCCGCGGTGACGGAGTTCGCGTACCGGTACGTATTGAAGGTAGCGAAGAGATTCCAGTTAGAAATGTGACTTTCCAAGATATGAATGTTGGGATAACATACAAAAAGAAGCATATCTTTCAGTGTGCATTTGTGGAAGGTCGAGTAATAGGGACCATTTTTCCGAAACCGTGTCTGAATTTTGATCAGTACAATGAACAAGGAGAGTTGGTTAAGCATGCAGTGTCACAGAATATAACAAATATAGATTATGAAATTTGA 1431 0.3955 MVLFSSHKSTSFFFVFLCVAALGSVFLVWQRNVINSFFVLGGVEVPVWESPKLRPVVFNLVDFGGVGDGVALNTMAFEKAISVISKFENKGGAQLNVPPGFWLTSPFNLTSHMTLFLAHDAVILGIQDESYWPLMPALPSYGHGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQTWWTKYLHKLLNHTRGPLVQLMYSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNILIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAMRIKTAPGRGGYVRQITYRNLTFHNVRVGIVIKTDYNEHPDTGYDPSALPILRDISFTHIRGDGVRVPVRIEGSEEIPVRNVTFQDMNVGITYKKKHIFQCAFVEGRVIGTIFPKPCLNFDQYNEQGELVKHAVSQNITNIDYEI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02329 476 SUPERFAMILY Pectin lyase-like 48 450 IPR011050 -
Tsu08g02329 476 PANTHER PECTIN LYASE-RELATED 9 474 - -
Tsu08g02329 476 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 9 474 - -
Tsu08g02329 476 Pfam Glycosyl hydrolases family 28 153 435 IPR000743 GO:0004650|GO:0005975
Tsu08g02329 476 SMART pbh1 225 252 IPR006626 -
Tsu08g02329 476 SMART pbh1 315 336 IPR006626 -
Tsu08g02329 476 SMART pbh1 405 426 IPR006626 -
Tsu08g02329 476 SMART pbh1 253 274 IPR006626 -
Tsu08g02329 476 SMART pbh1 287 309 IPR006626 -
Tsu08g02329 476 SMART pbh1 344 365 IPR006626 -
Tsu08g02329 476 SMART pbh1 378 400 IPR006626 -
Tsu08g02329 476 Gene3D - 45 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02329 Tsu-Chr8 33159417 33163797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02329 3 476 Glycoside Hydrolase AT1G19170 71.605 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02329 - - gmx:100791187 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04467 04 52459091 52463824 Tsu08g02329 08 33159417 33163797 PCT