Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04467 ATGATGGTCGAAACATCAACATTAGGTCGCTTCCACCACCAAAGACTCCACTTTAAACGCTGCGTTCCTGCATTCATTACCTCACACAAGACCCTCTTTTTGGTTCTATGGATCGCTGCTTTTTTATCGGTTTTTATTTGGCAGAGAAACATCGTCGTTGGTGGCTTTTTGTTTTTCGGACGGGTTTCTGTTAGACCGATTCCGAAGATGAGACCTGTGGCTTTCAATTTGACGGATTTTGGTGGTGTGGGTGATGGTGTTACTCTCAATACTGAAGCTTTTGAAAGAGCTATTTCTGCTATATCTAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTCCTGGTCGTTGGCTCACTGCACCGTTCAATCTTACAAGCCATATTACTCTTTTTCTAGCTGAAGATTCTGTTATTCTTGGCATTGatGATGAGAAGTATTGGCCACTCATGCCTCCGTTGCCTTCATATGGGTATGGAAGGGAGCGTCCCGGGCCTCGATATGGAAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCATAATGGCACCATAAATGGACAAGGACAAGCATGGTGGAAAAAATTTCGGCAGAAGCGTCTCAACTACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTCTACGCGACTCTCCTTTTTGGACGTTCCATCCATATGACTGCAAAAACATAACAGTAAAAGGTGTTACAATTTTGGCTCCTGTAATTGAAGCTCCAAACACTGATGGCATAGATCCTGACTCTTGCGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAGAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACATCACAGTGGAGAATCTTCTTGTATGGGATTCTAGGCGTGGTGTGAGGATAAAGACTGCACCTGGGCGAGGGGGATATGTGAGACAAATAACTTATCGGAATATAACGTTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAACGAACACCCTGACGACGGTTATGACCCTACAGCACTTCCAGATATAAGAGATATCAGCTTCACCAGAATCTATGGTCATGGAGTTCGTGTGCCGGTACGTATTCACGGTAGCGAAGAGATTCCTGTGAGAAATGTAACTTTTCGTGAAATGTCAGTTGGATTAACCTACAAGAAGAAGCACATATTTCAATGTGCATTTGTACACGGACGTGTAATAGGGACCATTTTCCCGTCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAACATTCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4325 MMVETSTLGRFHHQRLHFKRCVPAFITSHKTLFLVLWIAAFLSVFIWQRNIVVGGFLFFGRVSVRPIPKMRPVAFNLTDFGGVGDGVTLNTEAFERAISAISKLGKKGGAQLNVPPGRWLTAPFNLTSHITLFLAEDSVILGIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLRDSPFWTFHPYDCKNITVKGVTILAPVIEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNITVENLLVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPDIRDISFTRIYGHGVRVPVRIHGSEEIPVRNVTFREMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04467 493 SMART pbh1 361 382 IPR006626 -
Tsu04g04467 493 SMART pbh1 395 417 IPR006626 -
Tsu04g04467 493 SMART pbh1 332 353 IPR006626 -
Tsu04g04467 493 SMART pbh1 242 269 IPR006626 -
Tsu04g04467 493 SMART pbh1 304 326 IPR006626 -
Tsu04g04467 493 SMART pbh1 270 291 IPR006626 -
Tsu04g04467 493 Pfam Glycosyl hydrolases family 28 170 453 IPR000743 GO:0004650|GO:0005975
Tsu04g04467 493 PANTHER PECTIN LYASE-RELATED 23 491 - -
Tsu04g04467 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 23 491 - -
Tsu04g04467 493 Gene3D - 63 454 IPR012334 -
Tsu04g04467 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04467 Tsu-Chr4 52459091 52463824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04467 10 492 Glycoside Hydrolase AT1G19170 74.545 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04467 - - gmx:100818529 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04467 04 52459091 52463824 Tsu04g04467 04 52459091 52463824 ECH
Tsu04g04467 04 52459091 52463824 Tsu08g02329 08 33159417 33163797 PCT