Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02227 ATGATGTTGTCTAGAATGGAAAGTGGTAAGAAGAGTAGTGGGGTTTCTGGAAATCAAAAGAAATTGGTAAAGGATGTTGAAACTATGAATAAAGCTATGTACTTGGAAAGAAATGTTTCAAGGAGTTCAGTTTCAGGTCCGGGTTCGAATTCGAGGTCTAAAATTGGTGGAAAATCGCTATTTCCTGATCCGAAACCGAGGGGTAAAGGAAGTAATAgtaatgatgataatgatggtTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGGCCATTGAAGGCACTTTCGCATATTCGAAATAAACGGTTTAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGTTGCCTTCTAGTTTTAATGGTTCGAATTTTTCGGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTCCGGTTAAGGTTGTTCAGTGTGTGGCTGAATTTGATGAGAAGTTGACTTATACTTGCTCGGTTTACGGAAGTAGGAGTGGACCTCATCATTCTGCGAAGTATGAAGCAAAGCATTTTTTGCTTTACGCTTCTCTTCTCAGTGCGCCGGAGCTTGATTTGGGTAAGCACCGAGTTGATCTGACGAGGTTGCTTCCTCTCACTTTGGAGGAGCTTGAGGAGGAAAAGAGCTCGGGGAAGTGGACTACTAGTTTCAGGTTATCAGGAAAGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGATACACAGTTGTTTGTGATAACACCAGCGCGGTCCGAGATAGCCATAATGGTCCTAATGTATTGACTTCGAGGCAGAATAGTCTTGCTTTGATGAAACCAGACGCTAAACAAAAACAGTTTGATGGAAGCAGCAACATGAGGCGTGCCGGCAGTTTACAAAATTTTAGTAGTCGGTACTCGTCTCAAGCTGCAGAAGATGTAAAGGATCTTCATGAGGTGTTGCCATCTTCTAAATCTGCACTTGCCAGCTCAATAGGTGTCTTATATAAGAAATTCGAAGAAGAAAAGCCATGTAGCTCTCTGGACAATGAACCTGATCCTgatttgtcaaaagaaaatctCGAGCCAATCAAACCAGATGCATGTGATTCGCCTGATATCGGAAAAGAAACGCCTGAAGTGCATGCAGGTAACGATGAAAATTCATGTCCAGTGCTTGACACACCTGAACTCAATGCATTTCGAGAAAACCTGGAGACAGATGAACCAGATGACCATCTTTTACTTGATTCTGGAAAAGAAAACGTTGAAGACGGTCAAGATAACAATGAATTTTTCGTCGTTGATAAGGGTATTGAAATCTCACCAATTGAACCTGTTATAGAAGAGGAGTTGCTCACAAAGGCTTCTGAAGATGCTTCTACAGTTGATAGTACTTTTATCCTTGATACTGCAGGCATACAAGGATCTTCTGAAGATAGTTTTAAACACGATGATTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCATGCCGTGGTAGATGAATCTGCTTGCGAAGAGGATGACTTTTTGACAAACGAGCTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCCGATTTGGAGACAGCGGCTCTAGAATCTCCTAAAGTTGCAGAATTTAAATCTGAATATAAGATGACAAAGACACACAGTTTAGATGATGTTACAGAATCGGTTGCGAATGAATTTTTAAGCATGCTAGACGTAGACCATAGTCTGGAAGGCTTGAATTCTGAAAGCGAGCCCGAGTCTCCAAGAGAGCTTCTTTTAAGACAATTTGAGAAGGAAGCTCTTGATGGGGGCTTCTCTTTATTTGATTTCGATATGGAGTGTTATGATGAAGCAGATGATGGCTACAATGTGTCTAATGGATCTGAGCAGTGGAACTTCTCTGAGGCTACTCATTCATCATCCTTGTTCCAACACCTGCAGAAGGAGCATCTAGTTGAGTCTCACGATGTGAAGGGTAAACAAAAGGTTCAAATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTCAATGGGGATTGAACGAGAAGGCTTTTCACCATTCTCCACCGAAAGATTATACCGGTTTCGGAAGTCCAATTCAATTACCACCTGACGAGCCTCCGACATTGCCTCCTCTTGCCGATGGGTTAGGTCCTTTTCTTCAGACAAAAGACGGGGGTTATCTACGGTCTATGAATCCTGCAATTTTCAGGAACACTAAAGCTGGTGGGAGTTTAATCATGCAGGTTTCCAACCCTGTCGTTGTACCCGCAGAAATGGGTTCCGGGATAATGGAAGTTTTACAGTGTTTGGCTTCAGTGGGAATTGAAAAACTCTCAATGCAAGCAAAGGAGTTGATGCCACTGGAAGATATCACTGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTTCCTTAGAAGGAACAGAGAGGCAATTCCATTTGCAGAATGATTCAGTAATAGGTCAAGATACTTGTGTGCAAACGGATTTAATAGGAACACCACCATCTGGACGAAAGTCTGGCAATTTTAATTCAAGTTCGCTGGCCAATCAAACAGGTTCAGAGTTTGTTTCAATTGAAGATCTTGCCCCCTTGGctatgaacaaaattgaagcaCTTTCAATGGAGGGATTGAGAATACAATCTGGGATGTCGGATGAGGATGCACCATCTAACATTGTTGCACAATCCATTGGGGAAATGTCAGCTCTACAAGGCAAGGGCATTGATATTAACGGATCCCTCGGCATGGACGGAGCTGCCGGTTTGCAGTTGATGGATGTACAAAACAGCAGTGATGATGCTGTTGATGGGATAATGAGTCTATCATTAACTCTTGACGAGTGGATGAAGCTTGATTCAGGTGACATTGATGATGTAGATAATATCAGCGAGCATACTTCCAAAGTTCTTGCAGCCCATCATGCTAACTCTTTCGACTTTATCCGTGGGAGTTCAAAAGGAGGAGATAGGAGACGAGGAAAAGGCTCTGGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCGTTAATGGTGCAGCTTCGTGATCCTTTGAGAAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCGTCTtgccaaagaaaaaaatattttgtagtGTGTCCGAGTTGCGAAACAACAACAATGACGAGGATGATGAGAGCGAAATAGTAGCAAAGGTGGAGATGAAGGACTCCGATAAAGAGGAGAAAATTCCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCACGTGGCAGGTCTTAAACCTGAGCCTCAAAAAAAGAAGCTTTGGGGCACCTCGACGCAGCAACAATCTGGTTCGCGCTGGTTGGTTGCTAATGGAATGGGGAAGAGCAATAAGTTTCCATCAATGAAATCAAAAGCTGCATCTAAATCTGTTGCTCCGGTTACCACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCATTTCTTCGCGTATTTTTGGTTCTGGAAAAAAATGGAAGGATTTGGCCGCGCTAAATCCACATATAAGAAACCCTAATGTCATTATACCAAATGACACTATTAGACTTAGTTGA 3591 0.4163 MMLSRMESGKKSSGVSGNQKKLVKDVETMNKAMYLERNVSRSSVSGPGSNSRSKIGGKSLFPDPKPRGKGSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSSFNGSNFSVYWKRRDGVLVTRPVKVVQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYTVVCDNTSAVRDSHNGPNVLTSRQNSLALMKPDAKQKQFDGSSNMRRAGSLQNFSSRYSSQAAEDVKDLHEVLPSSKSALASSIGVLYKKFEEEKPCSSLDNEPDPDLSKENLEPIKPDACDSPDIGKETPEVHAGNDENSCPVLDTPELNAFRENLETDEPDDHLLLDSGKENVEDGQDNNEFFVVDKGIEISPIEPVIEEELLTKASEDASTVDSTFILDTAGIQGSSEDSFKHDDSLDEANDGCKDHAVVDESACEEDDFLTNELLQELESAINSVSDLETAALESPKVAEFKSEYKMTKTHSLDDVTESVANEFLSMLDVDHSLEGLNSESEPESPRELLLRQFEKEALDGGFSLFDFDMECYDEADDGYNVSNGSEQWNFSEATHSSSLFQHLQKEHLVESHDVKGKQKVQMLEDLETEALMRQWGLNEKAFHHSPPKDYTGFGSPIQLPPDEPPTLPPLADGLGPFLQTKDGGYLRSMNPAIFRNTKAGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPSLEGTERQFHLQNDSVIGQDTCVQTDLIGTPPSGRKSGNFNSSSLANQTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGMSDEDAPSNIVAQSIGEMSALQGKGIDINGSLGMDGAAGLQLMDVQNSSDDAVDGIMSLSLTLDEWMKLDSGDIDDVDNISEHTSKVLAAHHANSFDFIRGSSKGGDRRRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKKKIFCSVSELRNNNNDEDDESEIVAKVEMKDSDKEEKIPEAELIPQFKITEVHVAGLKPEPQKKKLWGTSTQQQSGSRWLVANGMGKSNKFPSMKSKAASKSVAPVTTKVQPGDTLWSISSRIFGSGKKWKDLAALNPHIRNPNVIIPNDTIRLS 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02227 1196 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 101 243 IPR019448 -
Tsu08g02227 1196 SUPERFAMILY LysM domain 1147 1195 IPR036779 -
Tsu08g02227 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1195 - -
Tsu08g02227 1196 MobiDBLite consensus disorder prediction 35 56 - -
Tsu08g02227 1196 Gene3D LysM domain 1138 1196 IPR036779 -
Tsu08g02227 1196 ProSiteProfiles C2 NT-type domain profile. 96 244 IPR019448 -
Tsu08g02227 1196 MobiDBLite consensus disorder prediction 337 377 - -
Tsu08g02227 1196 MobiDBLite consensus disorder prediction 337 387 - -
Tsu08g02227 1196 CDD LysM 1150 1195 IPR018392 -
Tsu08g02227 1196 Pfam LysM domain 1150 1195 IPR018392 -
Tsu08g02227 1196 ProSiteProfiles LysM domain profile. 1147 1195 IPR018392 -
Tsu08g02227 1196 SMART LysM_2 1148 1196 IPR018392 -
Tsu08g02227 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1195 IPR039614 -
Tsu08g02227 1196 MobiDBLite consensus disorder prediction 1 81 - -
Tsu08g02227 1196 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02227 Tsu-Chr8 30547677 30552505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02227 - - mtr:MTR_2g040970 1968.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02227 08 30547677 30552505 Tsu08g02227 08 30547677 30552505 ECH
Tsu04g04497 04 52691559 52694871 Tsu08g02227 08 30547677 30552505 PCT