Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04497 ATGTTGCcgaaaattgaaattgatggTGAAGAGTCGTTAAAAGATGTTCAAACTGTAACGAAAACCCTTTCTAagaattcatcaacatcaaaacaCAATGATCCAAAACCTGATAAAGAAGATACTAATTTCAAAAAGGATAAGAAATCCATATGGGATTGGAAGCTATTAAGAGCATTTTCTCTTACTAAGAGTAAGAAAttcaattgttgtttttctctTCAAGTTCATTTGATTGAAGGATTACCTTCGAGTTTCAATGATAAATCCCTTTGTGTTCATTGGAAGAGACGCGATCAACATTTCGTTACACCTCCGGCGAAAGTAGTTCAAGGTGTTGCTAAGTTTCAAGATATTTTGAGCTGTACTTGTTCTATTGTTGGAAGTAAAAGTGGATCATACAATTCTGCTAAGTATGAAGCTAAGCATTTTGTGCTCTATGCTTCTGTGCTTGGTGTTCCTGAACTTGATTTTGGGAATCATCGTTTAGATATAACATGGCTGCTTCCACTTTCGTTGGAAGATCTTGAAGAGGAGAAGAGCTCGGGGAAATGGAGTACAAGCTATAGATTATCAGGAAAGGCTAAAGGTGCTGTAATGAATGTGAGTTTTGGATATACGGTGGTTGGTGATAGCAACACTTGTGCTCCTAATGTATTGTCTTCGAGGCAAAATTGTATGGCTTTGAGTAAAACAGATGTGAATCCGTGTCAGTATTCGTCTCGGGTTATAGATGAGGTGAAGGATCTTCATGAAGTATTGACATCAACAAATTCAGCAAAGGCCGGTTCAACAGATGTCGTCTTGTGTAAGAAATTGGATGGTGAAAACACATGTAGTCCTCTGCACAAGAAACCTGAACTTGTACTAAAAGAGAATCTTGAGCCGATCAAATTAAATGTGTTTCAAGAAAACTTGGAGACAGGTGAGACAGTTGAGCCAGATGATTTTTTTACACCCGAGTCTGTAAAAGAGAATTATTATGAATGTGATGGATTTTCTGTTGTTGATCAGGGTGTTGGGTTTTCATCAAATGAACATAATAAAATTAAGGAATCCATTGTAGAAGCTATTGTTGATAGTTCTAAGGAAAGCACTGTGGTACATGAATTTTCGAACAAAAAGGATGAGTTATACACAAAAGAACTTCTCCTACAAGAAATAGAAACAGCTTTAAATTGTATCTCAGAGTTAGAGAAATTGGCATCGGAATCTCCTGAAATTATGGAAGTCACATCTGAAAGTAAGTTCAGAAAGTCACACAGCTTGGAATCCTTGGATGATGTTACCAAATCAGTTGCTGATGAATTTTTGAGTATGCTAAGCATAGATGATAGTCCAACAGGCTTTAGTTCTGAAAGTGAGCCCGAGTCTCCGAGAGAGCGCCTTTTAAGACAGTTTGAGAAGGACATGGGCTCTGAGGGATTCTCTTTTTTTGATGATGgcagtgatgatgatgatgatggtggtggtggtggtgatgatgaagatgattgtGGCTATGATGCATCTTTTGGATCTGAGCAGTGGAAGTTCTCTACAGAGATTAAGTCACCATCCTTGCAGGAAGGGCTTGAATTTGAGGATGTGAAGAGAAAACTAAAGGGCCACACACTAGAAGACATGGAAACAGAAGCCTTAATGTGCGAATGGGGTTTGAATGAGGAAGCGTTTCAGCATTCTCCACCAAAAGGCTATGCTGGTTTTGGAAGTCCAATACATCAACTTGCTGAAGAGCCTCCTAGATTACCTCCTCTAGCAGAAGGGTTTGGTCCTTTCCTCCAAACAAAAGATGGGGGATTTCTACGGTCTATGAATCCCTCACTTTTTACGAATGCTGACAGTGGCAGGAACTTAATCATGCAGATTTCCAACCCTGTTGTTATGCCTATAGAAATGGGTTCAGGGATAATGGAGACTTTACAGTATTTGGCATCAATCGGAATTGAAAAGCTTTCGGTACAGGCAAACAAGTTTATGCCTCTCGAAGATATCACAGGGAAGACGATGCAACAGATATCATGGGAAGCTATGTCAAGCTTAGAGGGAAAAGACAGGCAATGTATGCAGGATCATTTGGAGACGCGGAAAGGTTCTACTTATGTGCAAAGGGACTTGAAAGGATCGTCATCTGGACTAAAGTCTGATGAGTTCATTTCAAGTTCAATTTGCAACAACAGAGATTCAGGTATTTTTTCATTGGAAGATCTTGCTCCTTTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTAAAAATACAATCTGAGATGTCGGAAGAAGACGCGCCATCAAACATCATTGCACAATCCTTTGGAGATCTTCCTGCTATCCAAGCCAAGTGGGTTAACATTGGAGGTTCTCTTGGCTTGGATGGAGCAGCTGCTTTGCGGTTGATGAATATTAAAGACAGTGACGACGAAGTTGATGGGATAATGGGATTATCGTTAACGCTTGATGAATGGATGAGGCTGGATTCAGGTGAGATTGATGATATAGATCATATCAGTGAGCATACTTGCAAGCTTCTCGCTGCACATAATGCCAACACTTTTGACGTAGTCCGTGAGAGTTCAAACGAAAGGAAGAAACAAGGCAAAGGTCATAGCAGGAAATGCGGTTTGTTAGGAAACAATTTCACAGTAGCACTAATGGTGCAACTTCGCGATCCTCTGAGAAATTATGAGCCTGTTGGAACACCAATGCTAGGTCTTATACAAGTTGAGAGAGTGCTTGTCCCACCAAAGCAAAAGATTTACTTGAATGTGTCTCAGGTAGGGAACAATagtgatgaggatgatgatgagtGTGAAATAAGAGCAAAGGTAGAGATGAAGGACAAGAAAGAGGAGAGTAGTACTAATGAAAGTGGCATTGATCAGTTCAGAATTACAGAAGTTCATGTTTCAGGTCTTAAGATTCAGTCACACAAAAAGAAGCTTTGGGGTACATCAAATCAGCAACAATCTGGTTCCCGCTGGTTGATTGCTAATGGAATGGGCAAGAGTAATAAGAATCCATTAACAAAGTCTAAGGCTGCTCCTAAAGTTGGTGGTGATCAGGTTGTGCAACCTGGGGACACATTGTGGAGCATATCATCTCGTATTTTCGGTACTGTTGCAAAATTTAAGGAATTGGGAGCACTGAATACACATATAAGAAATCCCAATATCATTTTACCAAATGAATCTATATAA 3201 0.3814 MLPKIEIDGEESLKDVQTVTKTLSKNSSTSKHNDPKPDKEDTNFKKDKKSIWDWKLLRAFSLTKSKKFNCCFSLQVHLIEGLPSSFNDKSLCVHWKRRDQHFVTPPAKVVQGVAKFQDILSCTCSIVGSKSGSYNSAKYEAKHFVLYASVLGVPELDFGNHRLDITWLLPLSLEDLEEEKSSGKWSTSYRLSGKAKGAVMNVSFGYTVVGDSNTCAPNVLSSRQNCMALSKTDVNPCQYSSRVIDEVKDLHEVLTSTNSAKAGSTDVVLCKKLDGENTCSPLHKKPELVLKENLEPIKLNVFQENLETGETVEPDDFFTPESVKENYYECDGFSVVDQGVGFSSNEHNKIKESIVEAIVDSSKESTVVHEFSNKKDELYTKELLLQEIETALNCISELEKLASESPEIMEVTSESKFRKSHSLESLDDVTKSVADEFLSMLSIDDSPTGFSSESEPESPRERLLRQFEKDMGSEGFSFFDDGSDDDDDGGGGGDDEDDCGYDASFGSEQWKFSTEIKSPSLQEGLEFEDVKRKLKGHTLEDMETEALMCEWGLNEEAFQHSPPKGYAGFGSPIHQLAEEPPRLPPLAEGFGPFLQTKDGGFLRSMNPSLFTNADSGRNLIMQISNPVVMPIEMGSGIMETLQYLASIGIEKLSVQANKFMPLEDITGKTMQQISWEAMSSLEGKDRQCMQDHLETRKGSTYVQRDLKGSSSGLKSDEFISSSICNNRDSGIFSLEDLAPLAMDKIEALSMEGLKIQSEMSEEDAPSNIIAQSFGDLPAIQAKWVNIGGSLGLDGAAALRLMNIKDSDDEVDGIMGLSLTLDEWMRLDSGEIDDIDHISEHTCKLLAAHNANTFDVVRESSNERKKQGKGHSRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLGLIQVERVLVPPKQKIYLNVSQVGNNSDEDDDECEIRAKVEMKDKKEESSTNESGIDQFRITEVHVSGLKIQSHKKKLWGTSNQQQSGSRWLIANGMGKSNKNPLTKSKAAPKVGGDQVVQPGDTLWSISSRIFGTVAKFKELGALNTHIRNPNIILPNESI 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04497 1066 MobiDBLite consensus disorder prediction 21 44 - -
Tsu04g04497 1066 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 64 211 IPR019448 -
Tsu04g04497 1066 MobiDBLite consensus disorder prediction 998 1021 - -
Tsu04g04497 1066 MobiDBLite consensus disorder prediction 479 502 - -
Tsu04g04497 1066 ProSiteProfiles LysM domain profile. 1020 1066 IPR018392 -
Tsu04g04497 1066 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 24 1065 IPR039614 -
Tsu04g04497 1066 Gene3D LysM domain 1010 1066 IPR036779 -
Tsu04g04497 1066 MobiDBLite consensus disorder prediction 474 504 - -
Tsu04g04497 1066 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 24 1065 - -
Tsu04g04497 1066 ProSiteProfiles C2 NT-type domain profile. 60 208 IPR019448 -
Tsu04g04497 1066 CDD LysM 1023 1062 IPR018392 -
Tsu04g04497 1066 Pfam LysM domain 1023 1060 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04497 Tsu-Chr4 52691559 52694871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04497 - - lja:Lj4g3v2179220.1 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04497 04 52691559 52694871 Tsu04g04497 04 52691559 52694871 ECH
Tsu04g04497 04 52691559 52694871 Tsu08g02227 08 30547677 30552505 PCT