Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01237 ATGGGTTTGATTTCTGGGATTTTTATGGGGATGATATTCGGCATAGCATTGATGGCTGGATGGGCTCGTATGATGAAGTATAGAAGTTCCAAGAGAATTGCAAAGGCTGTTGACATCAAACTCCTTGGATCCCTCAACAGAGATGATTTAAAGAAACTTTGTGGTGAAAATCTTCCTGAGTGGATATCTTTTCCTGTATACGAGCAGGTGAAATGGCTAAACAAGCTTCTGAGCAAACTTTGGCCATTTGTGGCAGAAGCCGCAACACTGGTGATCAGGGAATCAGTTGAACCTCTACTGGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAACTGTCATTAGGAAATGTTGCTCCAAAAGTTGAAGGTATCCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATAGATTTCCGATGGGGTGGTGATCCCAGTATTATTTTGGCCGTCGAAGCTGCACTTGTTGCGTCAATCCCTATTCAGtTGAAGGATCTAAAAGTTTTTACCGTCATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTctgctgttgttgttgctcTACTTGCTGAGCCGAAGCCAAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACTGCTCTTCCTGGAATTTCAGATATGATTGACGATACTGTGGATACAATTGTTACCGATATGCTCCAATGGCCACATAGGATTGTTGTTCCACTTGGTGGGATACCTGTTGATATTAGTGAACTGGAGCTTAAACCTCAAGGAAGTCTTAAAGTGACTGTAGTGAAAGCGACTGGTTTAAAGAACATGGAAATGATCGGAAAATCAGATCCTTATGTAGTTTTGTCCATTCGACCCTTATTCAAGGTTAAAACCAAGGTCGTTAATAACAACTTGAATCCTGTCTGGGATCAAACATTTGAGTTGATTGCAGAAGATAAGGAGACTCAGTCACTCACTCTCGAGGTTTTTGATGAAGACATTGGGCAAGATAAGAGACTGGGAATTGTAAAATTACCCCTTATTGACCTGGAAGTACAAAATGAAAAGGAGCTTCAATTGAATCTGCTGTCATCACTTGATACACTCAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACTGTAAAGGTCTTCTATTACCAGTTTAACAAGGAAGAGCAATTGGCTGCACTAGAAGCAGAAAAAGCTATATTAGAAGAAAGGAAGAAACTAAAAGCGGCAGGCGTCATAGGTAGCACAATGGATGCACTTGACGGAGCAGCTGGACTAGTAGGGTCTGGTGTTGGACTAGTTGGAAGTGGTATTGTCGGCGGAGCCGGGCTTGTCGGTAGTGGTATTGGCGCTGGAGCAGGGATTGTTACCAGTGGTTTTGGAGCCTTCGGTAGCGGAATTACCAAAGCAGGAAAGTTTATGGGAAGGACCATAACAGGAGGTCATAGTGGCTCAAGAAGAAGTGGTTCATCTACTCCGGTTCATAATCCAAATCCACAGGAAAATGGTAGTGGTGCCGCAAAGCCTCAATAA 1554 0.4215 MGLISGIFMGMIFGIALMAGWARMMKYRSSKRIAKAVDIKLLGSLNRDDLKKLCGENLPEWISFPVYEQVKWLNKLLSKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKVEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLKVFTVIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVDTIVTDMLQWPHRIVVPLGGIPVDISELELKPQGSLKVTVVKATGLKNMEMIGKSDPYVVLSIRPLFKVKTKVVNNNLNPVWDQTFELIAEDKETQSLTLEVFDEDIGQDKRLGIVKLPLIDLEVQNEKELQLNLLSSLDTLKVKDKKDRGTLTVKVFYYQFNKEEQLAALEAEKAILEERKKLKAAGVIGSTMDALDGAAGLVGSGVGLVGSGIVGGAGLVGSGIGAGAGIVTSGFGAFGSGITKAGKFMGRTITGGHSGSRRSGSSTPVHNPNPQENGSGAAKPQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01237 517 Coils Coil 391 411 - -
Tsu08g01237 517 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Tsu08g01237 517 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Tsu08g01237 517 Pfam C2 domain 264 362 IPR000008 -
Tsu08g01237 517 Gene3D C2 domain 259 416 IPR035892 -
Tsu08g01237 517 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 507 IPR045050 GO:0008289
Tsu08g01237 517 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 507 - -
Tsu08g01237 517 MobiDBLite consensus disorder prediction 481 517 - -
Tsu08g01237 517 CDD C2 266 362 - -
Tsu08g01237 517 PRINTS C2 domain signature 281 293 IPR000008 -
Tsu08g01237 517 PRINTS C2 domain signature 306 319 IPR000008 -
Tsu08g01237 517 PRINTS C2 domain signature 328 336 IPR000008 -
Tsu08g01237 517 SMART C2_3c 265 362 IPR000008 -
Tsu08g01237 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Tsu08g01237 517 MobiDBLite consensus disorder prediction 488 517 - -
Tsu08g01237 517 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01237 Tsu-Chr8 13794490 13803614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g01237 266 354 Lipid Metabolism Gene Families AT4G00700 39.326 9.10e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01237 - - gmx:100777838 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01237 08 13794490 13803614 Tsu08g01237 08 13794490 13803614 ECH
Tsu04g01687 04 17842884 17850116 Tsu08g01237 08 13794490 13803614 PCT