Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01687 ATGGGTTTGTTTTTTGGGATTTTTCTTGGAGTATTATTCGGCATTGCATTGATGGCTGGATTGGAGCGAATGATGAAATACAGAAGCGCCAAACGGATTGCAAAGGCAGTTGACATTAAACTCCTTGGATCCCTTAATAGAGATGAATTAAAGAAAATTTGTGGTGAAAATTTACCTGAATGGATATCGTTCCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTGCTGTCCAAATTGTGGCCATTTGTGGCAGATGCAGCAACAATGGTGATAAGAGAATCTGTTGAACCGCTATTAGAAGAGTATAGACCTCCTGGAATTTCTTCGTTGAAGTTCAGTAAGCTGTCACTTGGAAATGTCGCTCCAAAAATTGAAGGTATTCGTGTTCAGAATCTTAAAAAAGGTCAAATAATAATGGACATTGATTTCCGTTGGGGCGGTGATCCCAATATTGTTTTGGCTGTTGATGCCGTTGTTGCGTCAATTCCTATTCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCAGTTGGTGGAAGTTTGACGGCACTTCCTGGAATTTCAGATATGATTGATGATACCGTGACCTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGCGGTATTCCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAAGGCTTCACCTGACTGTAATAAGAGCAAATGATCTAAAGAATATGGAAATGATTGGGAAGTCTGATCCTTATGTAGTTGTGCATATTCGACCATTgtttaaagttaaaacaaaggtTATTGATAACAACTTGAATCCAATTTGGAATGAGGAATTTGACTTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTCGAGGTTTTTGATGAAGACATTGGGCAAGATAAACGACTGGGAATAGCAAAATTGCCACTTATTGACTTGGAAGCAGAAACTGAAAAGGAAATGGAAGTGAGGCTTCTGTCATCGCTTGATACACTGAAAGTGAAAGATAAAAAGGATCGAGGAACCTTGAGAATTAAGTATTTCTATCATGAATTTAACAAGGAAGAGCAGAAGGCTGCACTAGAGGCAGAGAAAATGATACTAGAGGAAAGGAAGAAACTGAAAGAGGAAGGAGTTATAGGAAGTACAATGGATGCGCTAGACGGAGCAACAACAGTAGTTGGGTCTGGTGTTGGACTGGTTGGTTCTGGTGTTACTGCTGGTGCTGGACTGGTTGGTTCTGGTGTTACTGCTGGTGCTGGACTGGTTGGTTCTGGTGTTACAGCTGGTGCTGGACTTGTAGGAAGTGGTGTTGGTGCTGGAGCTGGACTTGTCGGAAGTGGAATTGGTGCTGGAACTGGATTTGTTGGCAGTGGATTCGGCGCTGTTGGCAGTGGGCTTGGTGCCGTTCACAGTGGACTGAGCAAAGCAGGAAAGTTCATGGGCAGGACAATCACAGGGCAATCTGGTGCATCCAGAAGGAGTGCCAGCGGTTCAACTACTCCTGTTGGTAATTTTGAGGAACATGGTGGTGGTGCAAAGCCGCGGACACTCACAGGGCATTCTGCTGCATCTAGGAGGAGTGCCAGCGGTTCAACTACTCCTATCGGTAATTTTGAAGAACATGGTGGTGGTGCAAAGCCTCGGTTAGTTACTTTTGTTGCTTGTTCTCTTGGAATCCATAATGAGTTTTCATTTTCACCGGGAATCGATTGA 1833 0.4315 MGLFFGIFLGVLFGIALMAGLERMMKYRSAKRIAKAVDIKLLGSLNRDELKKICGENLPEWISFPVYEQVKWLNKLLSKLWPFVADAATMVIRESVEPLLEEYRPPGISSLKFSKLSLGNVAPKIEGIRVQNLKKGQIIMDIDFRWGGDPNIVLAVDAVVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVTSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGRLHLTVIRANDLKNMEMIGKSDPYVVVHIRPLFKVKTKVIDNNLNPIWNEEFDLIAEDKETQSLILEVFDEDIGQDKRLGIAKLPLIDLEAETEKEMEVRLLSSLDTLKVKDKKDRGTLRIKYFYHEFNKEEQKAALEAEKMILEERKKLKEEGVIGSTMDALDGATTVVGSGVGLVGSGVTAGAGLVGSGVTAGAGLVGSGVTAGAGLVGSGVGAGAGLVGSGIGAGTGFVGSGFGAVGSGLGAVHSGLSKAGKFMGRTITGQSGASRRSASGSTTPVGNFEEHGGGAKPRTLTGHSAASRRSASGSTTPIGNFEEHGGGAKPRLVTFVACSLGIHNEFSFSPGID 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01687 610 SMART C2_3c 264 361 IPR000008 -
Tsu04g01687 610 MobiDBLite consensus disorder prediction 524 583 - -
Tsu04g01687 610 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 479 - -
Tsu04g01687 610 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 478 550 IPR045050 GO:0008289
Tsu04g01687 610 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 479 IPR045050 GO:0008289
Tsu04g01687 610 Coils Coil 390 417 - -
Tsu04g01687 610 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 478 550 - -
Tsu04g01687 610 MobiDBLite consensus disorder prediction 560 576 - -
Tsu04g01687 610 Pfam C2 domain 263 359 IPR000008 -
Tsu04g01687 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 261 390 IPR035892 -
Tsu04g01687 610 CDD C2 265 365 - -
Tsu04g01687 610 ProSiteProfiles C2 domain profile. 246 362 IPR000008 -
Tsu04g01687 610 PRINTS C2 domain signature 327 335 IPR000008 -
Tsu04g01687 610 PRINTS C2 domain signature 305 318 IPR000008 -
Tsu04g01687 610 PRINTS C2 domain signature 280 292 IPR000008 -
Tsu04g01687 610 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
Tsu04g01687 610 Gene3D C2 domain 258 417 IPR035892 -
Tsu04g01687 610 MobiDBLite consensus disorder prediction 524 543 - -
Tsu04g01687 610 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 247 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01687 Tsu-Chr4 17842884 17850116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01687 248 349 Lipid Metabolism Gene Families AT3G61300 30.097 5.04e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01687 - - gmx:100783641 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01687 04 17842884 17850116 Tsu04g01687 04 17842884 17850116 ECH
Tsu04g01687 04 17842884 17850116 Tsu08g01237 08 13794490 13803614 PCT