Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01140 atgtgGAAATTTGCACGCTTCGTTTCAGCTTCCAAACTCCTCCGATCTCGTCGATTCTCCACCGCGATTCCCGGTCCTTGCATTGTTCATAAACGCGGTGCTGATATCCTCCATGATCCCTGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAAAGGGATAGATTGGGGCTTCGGGGGCTTCTTCCTCCTCGTGTTATATCATTTGAGCAGCAATATGATCGCTTTAtGGATTCATACCGATCTTTGGAGAAGAATACTCATGGACAACCAGAAAAAGTTGTTTCCCTAGCGAAATGGAGAATCTTAAATAGACTGCATGACAGGAATGAAACTTTGTACTACAGAGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCTACAGTTGGATTAGTGTGTCAAAATTATTCAGGGTTATTTAGACGGCCACGTGGAATGTATTTTAGTGCCAAAGACAAAGGCGAGATGATGTCAATGATCTATAACTGGCCAGCTCATGAGGTGGACATGATTGTCTTGACAGATGGAAGTCGAATTCTTGGATTGGGTGATCTTGGAGTTCAAGGAATAGGAATACCCATTGGAAAACTTGATGTATATGTTGCTGCTGCTGGTATCAACCCGCAAAGAATACTTCCAGTCATGCTAGATGTTGGAACAAACAATCAAAAGCTACTTGGAGATCGCCTCTATTTAGGACTTCGACAACCAAGACTGGAAGGTGAAGAGTATCTGTCAATTGTTGATGAATTCATGGAAGCAGTTCATGCTCGATGGCCCAAGGCTATTGTGcagTTTGAAGATTTCCAAATGAAGTGGGCTTTTGAAACCCTAGAACGATATAAGAAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACTGCTGGTGTTGCACTTGCTGGATTATTGGGAAGTGTAAGATCTCAAGGTCGACCATTGTCTGATTTTGTGAATCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCAGGGCTAGGGGTTCTGAAAATGGCCATCCAGGCAGTTGAAAGAATTTCTGGGTGCAGTGAATCAGCTGCCAAAAGTCAATTCTTTCTGATCGATAAAAATGGTCTAGTCACAACAGAAAGGAACAATATAGATCCTGCTGCAGCCCCATTTGCTAAAAATCCAAGAGACATAGATGGGCTTACTGAGGGTGCTAGTATAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTCCTAGGTTTGTCTGGTGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACCTTGAATGCTGAGTGCACTGCTATTGATGCTTTTAATCATGCTGGGGAACATATAGTGTTTGCTAGTGGAAGCCCTTTCGAAAACGTAGATTTTGGTGATGGGAAAGTAGGCCATGTAAATCAAGCAAACAATATGTACCTCTTCCCAGGAATTGGTTTGGGTACACTTCTGTCAGGTGCTCATCTTATTACAGATGGAATGTTGCAGGCAGCTGCTGAACGCCTTGCTTCATACATGGATGAGGAAGATATCTTAAAAGGAATTCTATATCCATCTGTTAATAGCATACGAGATGTTACCGCAGAGGTTGGAGCTGCTGTGCTTCGAGCAGCAGTTGAAGAAGATCTGGCAGAGGGATATGGCGAAGTAGGGTCTAGAGAACTTGCACACATGTCAAAAGAGGAGACTGTCGAGTATGTCCGACAAAATATGTGGTACCCTGTGTATTCTCCTCTTGTTCATGAAAAATAA 1815 0.4209 MWKFARFVSASKLLRSRRFSTAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMDSYRSLEKNTHGQPEKVVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLGDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYKKRFCMFNDDIQGTAGVALAGLLGSVRSQGRPLSDFVNQKIVVVGAGSAGLGVLKMAIQAVERISGCSESAAKSQFFLIDKNGLVTTERNNIDPAAAPFAKNPRDIDGLTEGASIIEVVKKVKPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTLNAECTAIDAFNHAGEHIVFASGSPFENVDFGDGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAAAERLASYMDEEDILKGILYPSVNSIRDVTAEVGAAVLRAAVEEDLAEGYGEVGSRELAHMSKEETVEYVRQNMWYPVYSPLVHEK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01140 604 PANTHER MALIC ENZYME 1 600 - -
Tsu08g01140 604 CDD NAD_bind_1_malic_enz 297 595 - -
Tsu08g01140 604 Pfam Malic enzyme, N-terminal domain 107 287 IPR012301 GO:0004471
Tsu08g01140 604 Gene3D - 295 604 - -
Tsu08g01140 604 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 19 296 IPR046346 -
Tsu08g01140 604 Gene3D - 31 294 IPR037062 GO:0004471
Tsu08g01140 604 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 297 601 IPR036291 -
Tsu08g01140 604 PANTHER MALIC ENZYME-RELATED 1 600 - -
Tsu08g01140 604 SMART malic_2 107 287 IPR012301 GO:0004471
Tsu08g01140 604 Pfam Malic enzyme, NAD binding domain 297 559 IPR012302 GO:0051287
Tsu08g01140 604 PIRSF ME 8 603 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 113 137 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 173 202 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 209 231 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 268 286 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 293 309 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 327 343 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 PRINTS Malic enzyme signature 436 452 IPR001891 GO:0004470|GO:0004471
Tsu08g01140 604 SMART Malic_M_2 297 560 IPR012302 GO:0051287
Tsu08g01140 604 ProSitePatterns Malic enzymes signature. 293 309 IPR015884 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01140 Tsu-Chr8 12551379 12559004 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01140 K00028 - gmx:100806545 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01140 08 12551379 12559004 Tsu08g01140 08 12551379 12559004 ECH
Tsu04g01735 04 18426169 18433402 Tsu08g01140 08 12551379 12559004 PCT