Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01735 ATGTGGAAGCTCACGCGATTCGCCTCGTCGTCACGATATCGGTTGTTCTCCACGGCGATTCCTGCTCCCTGTATGGTTCATAAGCGCGGTGCTGATATTCTTCACGATCCTTGGTTCAATAAGGATACTGGATTTCCCTTGACTGAAAGGGATCGTTTGGGGCTACGAGGCCTCCTTCCTCCTCGTATAATTTCATTTCAAGACCAATATGATCGTTTTAtgAACTCATATAGATCACTGGAGAAGAATACCCATGGCCAATCGGATAAAATTATTTCCCTATCCAAATGGAGGATCTTAAATAGACTGCATGACAGGAATGAGACTCTGTACTATAGAGCTCTTATTGATAATATCAAAGAATTTGCTCCAATAATCTATACTCCTACAGTTGGGTTAGTGTGTCAAAATTATTGCGGGCTATTCAGACGCCCACGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTCCTCAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGGTTAGGCGACCTTGGAGTTCAGGGCATTGGAATACCTATAGGAAAACTTGATATGTATGTTGCAGCTGCTGGTATCAACCCACAAAAAATACTTCCAGTCATGCTGGATGTTGGCACAAACAATCAAAAGCTACTTGATGATCGCCTTTATTTAGGAGTTCGGCAACCTAGGTTGGAAGGTGAAGAGTATCTGTCGATTGTGGATGAATTCATGGAAGCTGTTCACGCACGATGGCCTAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGCCAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACAGCTGGTGTTGCACTTGCTGGATTACTGGGAACTGTAAGAGCCCAAGGTCGACCGTTGTCTGATTTTGTGAAACAAAAGATAGTTATAGTTGGAGCTGGCAGTGCAGGACTTGGGGTTCTTAACATGGCTGTCCAGGCAGTTTCAAGGATGCCAGGGTGCAGTGAAACCGATGCtaaaagtcaattttatttaattgataaagATGGTCTTATCACGACAGAAAGGAGTAATCTAGATCCGGCTGCAGTTCCATTTGCTAGGAATCCAAGAGATCTTGAAGGGCTCGCAGAGGGTGCTAGCATCATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTGCTTGGATTGTCTGGGGTCGGTGGTGTTTTTAATGAGCAGGTTCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAATCCCACTATGAATGCTGAGTGCACTGCTATTGATGCATTTAATCATGCTGGAGAAAACATAGTGTTTGCAAGTGGAAGCCCTTTTGAAAATGTAGATCTTGGAAATGGAAGAGTAGGCCATGTAAATCAAGCCAACAACATGTACCTGTTCCCAGGGATTGGCTTGGGATCACTTCTGTCTGGAGCTCGTCATGTAACAGATGGAATGTTGCAGGCAGCATCTGAATGCCTTGCTTCATACATGACAGACGAAGATATCAAGAAAGGAATCTTGTATCCATGCATTGATAGTATAAGAAACGTTACAGCAGAGGTTGGGGCTGCTGTTCTACGTGCAGCAGTTGCTGAAGGGATGGCTGAAGGACATGGGGTTGTAGGGTCCAAAGAACTTGAACATATGTCAAAAGAGGATACTGTGAAGTATGTCAGAGGAAATATGTGGTACCCTGAGTATAGCCCCCTTATTCATGAAAAATGA 1806 0.4302 MWKLTRFASSSRYRLFSTAIPAPCMVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRIISFQDQYDRFMNSYRSLEKNTHGQSDKIISLSKWRILNRLHDRNETLYYRALIDNIKEFAPIIYTPTVGLVCQNYCGLFRRPRGMYFSAKDKGEMMSMIYNWPAPQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQKILPVMLDVGTNNQKLLDDRLYLGVRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRQRFCMFNDDIQGTAGVALAGLLGTVRAQGRPLSDFVKQKIVIVGAGSAGLGVLNMAVQAVSRMPGCSETDAKSQFYLIDKDGLITTERSNLDPAAVPFARNPRDLEGLAEGASIIEVVKKVKPHVLLGLSGVGGVFNEQVLKAMRESVSTKPAIFAMSNPTMNAECTAIDAFNHAGENIVFASGSPFENVDLGNGRVGHVNQANNMYLFPGIGLGSLLSGARHVTDGMLQAASECLASYMTDEDIKKGILYPCIDSIRNVTAEVGAAVLRAAVAEGMAEGHGVVGSKELEHMSKEDTVKYVRGNMWYPEYSPLIHEK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01735 601 ProSitePatterns Malic enzymes signature. 290 306 IPR015884 GO:0004471
Tsu04g01735 601 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 294 598 IPR036291 -
Tsu04g01735 601 Gene3D - 292 601 - -
Tsu04g01735 601 PANTHER MALIC ENZYME 4 597 - -
Tsu04g01735 601 PRINTS Malic enzyme signature 324 340 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 265 283 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 433 449 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 110 134 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 290 306 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 170 199 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PRINTS Malic enzyme signature 206 228 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 SMART malic_2 104 284 IPR012301 GO:0004471
Tsu04g01735 601 SMART Malic_M_2 294 557 IPR012302 GO:0051287
Tsu04g01735 601 CDD NAD_bind_1_malic_enz 294 592 - -
Tsu04g01735 601 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 11 293 IPR046346 -
Tsu04g01735 601 Pfam Malic enzyme, N-terminal domain 104 284 IPR012301 GO:0004471
Tsu04g01735 601 Gene3D - 28 291 IPR037062 GO:0004471
Tsu04g01735 601 Pfam Malic enzyme, NAD binding domain 294 556 IPR012302 GO:0051287
Tsu04g01735 601 PIRSF ME 5 600 IPR001891 GO:0004470|GO:0004471
Tsu04g01735 601 PANTHER MALIC ENZYME-RELATED 4 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01735 Tsu-Chr4 18426169 18433402 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01735 K00028 - gmx:100795823 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01735 04 18426169 18433402 Tsu04g01735 04 18426169 18433402 ECH
Tsu04g01735 04 18426169 18433402 Tsu08g01140 08 12551379 12559004 PCT