Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g01085 ATGGacaattcatcaaattttgaCTCAACTTCTTCTGTGGATCAAAATGATCATTTAATCAGTGAGACTCCTGAGTACTCACCATTCAGCGGCGATTCTTTTGCGTATTGTCGGAGTAATTCCGAGGTTTCGAATTTATCTGAGGCTATTGATGACAATAGTTATGCTAGTGACCCTTCACCTTCACCATGGATGAGTGTGAAACATGGAGCTGTTCTTTCAAGGTTAGGAATGAAGCAAAGAAAGCATTCATTAGGTGGTAAATCTGATGATCTTGATCTATTGGAGACAGAACTTGAAATGATGAAGGAAAGATTTTCTAAGCTTCTTTTAGGGGAAGATATGTCTGGTGGTGGTAAAGGTGTTTGCACTGCAGTTACAATATCAAATTCCATTACCAATCTCTATGCAACTGTATTTGGACATAATTTGAAGTTAGAGCCTCTAAAGGCTGAGAAGAAAGCTATGTGGAAAAGAGAAATGAATTGTCTTATGTCTGTGTGTGATTACATAGTAGAATTTGCCCCAACTGCACAATACTTGGATGATGGTACAATTGTGGAGATGATGACAAGTAGACCAAGGGCAGATATTTATATCAACCTTCCAGCTCTACAGAAGCTTGACACAATGCTCATAGAAATCTTTGATAGTTTCCAGGATACTGAATTCTGGTATGCAGAACAAGGGAGCATATCAGGGAATTCAAACCGTAGTTCACATTCGAGTGCTGGTTCGCATTCAAAGGCAGGTTCGTTTCGAATAATTGCTCAAAGAAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCACTCTGGTGGCCTCTCTGATAAATCAAAGAAGCATTTGATTGAGAAAAGAGATTGTGCTAATCAAATTCATAAAGCTGCTATGGCAATAAATAGCAGTGTTCTTGCGGAGATGGATATTCCGGAAACATACATGGCAAATCTTCCTAAGAGTGGAAGATCAAGTCTAGGGGACGCAATTTATCGCTACATGCATTCTGGGGACAAGTTTTCACCAGGCAACCTTCTTGATTGTCTCAAAATAAGTACAGAACATGAAGCACTTGAACTAGCCGATAGAGTTGAATCGTCAATGTACACATGGAGACGTAAAGCTTGCTTAAGCCATTCAAAATCTTCATGGAACAAAGTAAAGGAATTTATGGCTGACACTGGCCAAAGCGACAAAAACTTTGTCTTAGCTGAAAGAGCTGAgactttattgtttttcttgaaaCAAAGATATCCTGAATTGTCACAAACCTCGTTGGACACATGCAAGATTCAATACAATCAGGATGTAGGAAAAGCAATACTAGAAAGCTACTCAAGAGTATTAGAAGGCTTAGCATTCAACATTGTTGCTTGGATTGAAGATGTTCTTTGTGCAGATAAATCTATGAGGAACTAA 1422 0.3812 MDNSSNFDSTSSVDQNDHLISETPEYSPFSGDSFAYCRSNSEVSNLSEAIDDNSYASDPSPSPWMSVKHGAVLSRLGMKQRKHSLGGKSDDLDLLETELEMMKERFSKLLLGEDMSGGGKGVCTAVTISNSITNLYATVFGHNLKLEPLKAEKKAMWKREMNCLMSVCDYIVEFAPTAQYLDDGTIVEMMTSRPRADIYINLPALQKLDTMLIEIFDSFQDTEFWYAEQGSISGNSNRSSHSSAGSHSKAGSFRIIAQRKDEKWWLPVPCVHSGGLSDKSKKHLIEKRDCANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRSSLGDAIYRYMHSGDKFSPGNLLDCLKISTEHEALELADRVESSMYTWRRKACLSHSKSSWNKVKEFMADTGQSDKNFVLAERAETLLFFLKQRYPELSQTSLDTCKIQYNQDVGKAILESYSRVLEGLAFNIVAWIEDVLCADKSMRN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g01085 473 MobiDBLite consensus disorder prediction 1 30 - -
Tsu08g01085 473 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 321 IPR038937 GO:0005085
Tsu08g01085 473 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 98 472 IPR005512 GO:0005085
Tsu08g01085 473 ProSiteProfiles PRONE domain profile. 89 473 IPR005512 GO:0005085
Tsu08g01085 473 Gene3D PRONE domain, subdomain 1 343 473 - -
Tsu08g01085 473 Gene3D PRONE domain, subdomain 1 92 338 - -
Tsu08g01085 473 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 321 473 IPR038937 GO:0005085
Tsu08g01085 473 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 321 473 - -
Tsu08g01085 473 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g01085 Tsu-Chr8 11870595 11874499 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g01085 - - gmx:100785956 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g01085 08 11870595 11874499 Tsu08g01085 08 11870595 11874499 ECH
Tsu04g01748 04 18672257 18675162 Tsu08g01085 08 11870595 11874499 PCT