Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00877 ATGGTCCAAGTTGAGAAGAAGCAAGAGAAAATAGATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTGGTTGTAATTGGTGACTCAGCAGTTGGAAAAACTCAAATACTTTCAAGATTTTCAAAGAATGAGTTTTGCTTTGACTCAAAGTCAACTATTGGAGTTGAATTTCAAACTAGGACTGTCACTATTAATGGAAAAGTAATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTAACAAGTGCATACTACAGAGGTGCATTAGGTGCAATGTTAGTATATGACATAACAAAAAGACAATCATTTGATCATGTTGCAAAATGGGTTGAAGAACTAAGAGCACATGCAGATACCTCTATTGTGATAATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAATTTGCAGAAGATCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGAGAATGTGGAGAGTGCATTTATCAAATTGTTAGAAGAGATTAATAGTGTTATTTCTAAAAAGGCTTTGGAATGTGGTAATGGTTACTATGATGCTACTAAACTTAAAGGTTCAAATGTTGATGTAATTTTAGGTGCTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGTTCTTGTTGA 693 0.3506 MVQVEKKQEKIDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADTSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGENVESAFIKLLEEINSVISKKALECGNGYYDATKLKGSNVDVILGAELEISEMKKLSSCSC 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00877 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 186 IPR027417 -
Tsu08g00877 230 PRINTS Transforming protein P21 ras signature 23 44 - -
Tsu08g00877 230 PRINTS Transforming protein P21 ras signature 46 62 - -
Tsu08g00877 230 PRINTS Transforming protein P21 ras signature 64 86 - -
Tsu08g00877 230 PRINTS Transforming protein P21 ras signature 126 139 - -
Tsu08g00877 230 PRINTS Transforming protein P21 ras signature 161 183 - -
Tsu08g00877 230 ProSiteProfiles small GTPase Rab1 family profile. 18 228 - -
Tsu08g00877 230 PANTHER - 4 230 - -
Tsu08g00877 230 Pfam Ras family 24 184 IPR001806 GO:0003924|GO:0005525
Tsu08g00877 230 PANTHER RAS-RELATED PROTEIN RABA3 4 230 - -
Tsu08g00877 230 CDD Rab11_like 20 183 - -
Tsu08g00877 230 Gene3D - 15 205 IPR027417 -
Tsu08g00877 230 ProSiteProfiles small GTPase Rho family profile. 16 195 - -
Tsu08g00877 230 SMART arf_sub_2 11 187 - -
Tsu08g00877 230 SMART rab_sub_5 23 186 - -
Tsu08g00877 230 TIGRFAM small_GTP: small GTP-binding protein domain 22 176 IPR005225 GO:0005525
Tsu08g00877 230 SMART ran_sub_2 28 225 - -
Tsu08g00877 230 SMART rho_sub_3 25 189 IPR001806 GO:0003924|GO:0005525
Tsu08g00877 230 ProSiteProfiles small GTPase Ras family profile. 17 213 IPR001806 GO:0003924|GO:0005525
Tsu08g00877 230 SMART ras_sub_4 20 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00877 Tsu-Chr8 9615132 9618094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00877 K07904 - gmx:100799439 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00877 08 9615132 9618094 Tsu08g00877 08 9615132 9618094 ECH
Tsu07g04713 07 51536537 51538781 Tsu08g00877 08 9615132 9618094 PCT