Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04713 atgaatcaggAAATGAATGGAGTGGAACCTGAAAGAATCCAAGAGAAAATAGATTATGTTTTTAAGGTTGTTGTGATTGGTGACTCAGCAGTAGGAAAGACACAAATACTGTCAAGGTTTGCAAAGAATGAGTTCTGTTATGACTCAAAATCAACTATTGGAGTTGAATTTCAAACAAGAACAGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTTACAAGTGCATACTATAGAGGAGCATTAGGAGCCATGCTGGTTTACGACATAACCAAAAGACAAACATTCGATCATGTTGCTAGATGGGTCGAGGAACTACGAGCACATGCGGACAACTCCATTGTGATCATGCTAATCGGTAACAAAGGTGATCTTGTGGACCAAAGAGTAGTACACACAGAAGATGCTGTGGAGTTTGCAGATGATCAGGGCCTATTTTTCTCAGAGACTTCAGCTCTGAGTGGTGAAAATGTGAACTCTGCATTTTTCAAATTGCTTGAAGAGATTAATAAGGTTGTCTCAAAAAGGTCATTGGagtgtaataataatattagaaaTAATGTTGGTACACTTAAAGGATCGAAAATTGATATAATATCAGGTGCTGAATTAGAAATTAGTGAAATGAAGAAAGTTGTACCTTCATCATGTTCTTGTTGA 696 0.3649 MNQEMNGVEPERIQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCYDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWVEELRAHADNSIVIMLIGNKGDLVDQRVVHTEDAVEFADDQGLFFSETSALSGENVNSAFFKLLEEINKVVSKRSLECNNNIRNNVGTLKGSKIDIISGAELEISEMKKVVPSSCSC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04713 231 CDD Rab11_like 18 181 - -
Tsu07g04713 231 ProSiteProfiles small GTPase Rho family profile. 14 185 - -
Tsu07g04713 231 SMART ras_sub_4 18 184 - -
Tsu07g04713 231 SMART rab_sub_5 21 184 - -
Tsu07g04713 231 TIGRFAM small_GTP: small GTP-binding protein domain 20 174 IPR005225 GO:0005525
Tsu07g04713 231 Gene3D - 13 209 IPR027417 -
Tsu07g04713 231 Pfam Ras family 22 182 IPR001806 GO:0003924|GO:0005525
Tsu07g04713 231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 197 IPR027417 -
Tsu07g04713 231 PRINTS Transforming protein P21 ras signature 124 137 - -
Tsu07g04713 231 PRINTS Transforming protein P21 ras signature 159 181 - -
Tsu07g04713 231 PRINTS Transforming protein P21 ras signature 62 84 - -
Tsu07g04713 231 PRINTS Transforming protein P21 ras signature 21 42 - -
Tsu07g04713 231 PRINTS Transforming protein P21 ras signature 44 60 - -
Tsu07g04713 231 ProSiteProfiles small GTPase Ras family profile. 15 231 IPR001806 GO:0003924|GO:0005525
Tsu07g04713 231 SMART rho_sub_3 23 187 IPR001806 GO:0003924|GO:0005525
Tsu07g04713 231 ProSiteProfiles small GTPase Rab1 family profile. 16 219 - -
Tsu07g04713 231 PANTHER RAS-RELATED PROTEIN RABA3 1 229 - -
Tsu07g04713 231 PANTHER - 1 229 - -
Tsu07g04713 231 SMART ran_sub_2 26 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04713 Tsu-Chr7 51536537 51538781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04713 K07904 - gmx:100787725 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04713 07 51536537 51538781 Tsu07g04713 07 51536537 51538781 ECH
Tsu07g04713 07 51536537 51538781 Tsu08g00877 08 9615132 9618094 PCT