Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00481 atggcaaacaACAATCACATTCACCCTCAAGTCAAGTCCACCACAAACGGCGGTGCAGCCGCAGTTAAGCCCTCGTTCCCGGCCACAAAAGCGCAAATCTACGGTGCCAGTCGCCCGACATACCGTCCTCAAACCAATCACCGGCGCCGTAGCAACCGTAATTGGTGTTGCACCATTTGTTGTTGGCTTATACTCATCCTCATCTTCATCCTCATCCTCCTCGGTGCCGCTGGCACCGTCGTCTACCTCCTCTACCATCCCCAACGTCCTTCCTTTTCCGTCACCTCTCTTAAACTCACCTCATCTGAGTTGGATCTCACTCTTTCCACCACCAACCCAAATGACAAAATCACATTTTCTTACCAACCTATCTCTGTTTCTCTTCTAGCCGGTGGACTCGACATTGGTGATGGCGTTATTCCGTCGTTCGAGCATGCTACGAAGAATACTACAATGTTGAAAGCTTTGGTTGAGATGAAGAGTGTGAAGAGGAAGTCATTGGAGTTAAAGATCAAGATGGAGACTAAAGTGGAGGCTAAGATGTGGGTTTTTAAGACGCCACGTGTCGGAATAAGCGTGTTGTGTGACGGCATTGATGTCGCCGGCGAGAAAGTGACGGCGACCGGTGATAAGTGTGAGGTGGATGTTAGGTTCAAGGTATGGAAATGGACTCTTGGATGA 681 0.4875 MANNNHIHPQVKSTTNGGAAAVKPSFPATKAQIYGASRPTYRPQTNHRRRSNRNWCCTICCWLILILIFILILLGAAGTVVYLLYHPQRPSFSVTSLKLTSSELDLTLSTTNPNDKITFSYQPISVSLLAGGLDIGDGVIPSFEHATKNTTMLKALVEMKSVKRKSLELKIKMETKVEAKMWVFKTPRVGISVLCDGIDVAGEKVTATGDKCEVDVRFKVWKWTLG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00481 226 Pfam Late embryogenesis abundant protein 107 193 IPR004864 -
Tsu08g00481 226 PANTHER CHAPERONIN CPN60-LIKE PROTEIN 7 224 - -
Tsu08g00481 226 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 7 224 - -
Tsu08g00481 226 SUPERFAMILY LEA14-like 71 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00481 Tsu-Chr8 4855354 4856197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00481 30 181 EF-hand Containing Proteins AT5G21130 27.879 1.33e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00481 - - mtr:MTR_8g016370 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05367 02 62210331 62211588 Tsu08g00481 08 4855354 4856197 PCT