Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00479 ATGGCTTCAGTTGGTACAGTTAAATTTTTATTGTGCTTTGTTCTATGGCTTTGGAACTGCAACTTTCTACCTCCTTGTCAAGGTAAACAACAAGACTATCCATTTATAAAAAAAGCAAGTTCATTTTCATCACCATCAATTTCAACTACATCACTCAACAAAGCTTATGACTACATAATTATTGGAGGTGGAACTGCAGGGTGTCCATTAGCAGCAACACTATCTCAAAACTTTAGTGTCTTATTACTTGAAAGAGGAGGTGTTCCTTTCTCTAATCCAAATGTAACATTTCTTGAAAATTTTCACATTACCTTGGCAGACACTTCACCAACTTCAGCTTctcaatattttctttcaactGATGGAGTTTTTAATGCAAGAGCAAGAGTTTTgggtggtggtagtgctatcaATGCTGGTTTCTATACTAGAGCAAGTTCAAgGTTTATAAATAAGGTAGGATGGGATAAAAAGCTAGTAAATGAGTCATACCCTTGGGTTGAGAAGCAAATTGTTCATCGTCCGAAATTTTCGCCATTCCAAAGTGCATTGAGGGACAGCCTTATAGATACTGGAGTCTCTCCTTATAATGGATTCACCTATGATCATATTTATGGTACAAAGGTTGGTGGAACCATTTTCGACAGATTTGGTCGCCGTCACACAGCTGCTGAACTTCTTGCTTCTGGAAACCCCGACAAACTTACAGTTTTGGTCCACGCCACTGTCCAAAAGATCGTTTTCGATACAACAGGTAAAAGACCAAAAGTTGTAGGAGTTATTTTCAATGATGAAAATGGTAAACAACATGAAGCAATGCTTGGAAATGATGTTCAAAGTGAAGTGATATTGTCTAGTGGAGCAATTGGAAGTCCTCAAATGCTACTTCTAAGTGGAATTGGTCCTAAAGATGAACTTCAAAATTTGAACATCTCAGTAGTCCTTAACAATCCATTTGTTGGGAAGGGAATGATTGATAATCCTATGAACAATATCTTTGTTCCTTCTAATAGGCCAGTTGATGTGTCACTCATACAAACTGTTGGTATCACCAAGAAAGGTGTGTACATTGAGGCTAGCAGTGGGTTTAGTCAGTCCAATAGCAGCATTCATTGCCATCACGGTATCGTCTCTGCTGAGATTGGTCAACTTTCTACAATTCCTCCAAAGCAAAGATCAATAGAAGCAATTCAAGCTTACGTAAAAAGCAAGCGAGATATACCGGTTGAAGCATTCAACGGAGGCTTTGTATTGACAAAAGTAGGCAGTGCTTGGTCAGTAGGTGAGCTCAAGTTGAATAACACCAATGTGAATGACAATCCTACTATTACCTTCAACTACTTCAGTCATCCGTACGATCTACAGCGCTGCGTCGAAGGAATCCGCATGACAATTAAAGTAGTTCAGTCGGAACACTTCACAAACTATACATTGTGTAAGAAAGAAAGCATGGAGAAAATTCTTAACATTAGTGTGAAAGCAAATGTCAACTTCATACCAAGACATGCCAATGACACAACATCACTAGAGCAGTTTTGCAAAGACACTGTTATCACAATTTGGCACTACCATGGTGGATGTCATGTGGGGAAGGTAGTTGATCCTGATTATAAGGTTCTTGATGTTGAAAGACTTCGAGTCGTCGATGGCTCGACGTTTACCGAATCACCAGGAACAAATCCTCAAGCTACTGTAATGATGATGGGAAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAGATTGGCTGAATGGAAGGACAAGTTAACCAGAACCAGAATGTTGCTGATGAAGTCTTGGGACAACAAGTTAACCAGACTCCTGCTGAAAATGGAAGGACAAGTTAACCAGAACCAGAATGTTGCTGATGAAGTCTTGGGATCACAAGTTAACCAGACTCCTGCTGAAGTAATGTGCATAACCCTAAAATCTTTTCATCTCAAGTGTGATTACGATCTCTGGGATGCCAAGGCTGAATCCTTCTCTTTGAATCAATGGATCAAAGCGGCAAAACAACGTGGTATCAAGTATCTCAATCTACACATGTCTAACGTCCTTTTGATTCCTACTACTCTTTTCTGTTGCAAAACACTTGTGGTTTTGAAATTGACCAATATGCGTGTACGGAAGATGTATTGTTGTTCTGTTGATCTTCCTTCGCTTAAAACCTTGGATCTGGATAGTGTTTCTTTCCATGCTATGGAGAATTTAATGAGACTTATTTTGGGGTGTCCCATATTGGAGAATTTGATAACTGTATATGTTGAAGCACGAGTCGAACATGCAGTAGGAGGCTACTTTAAACCCTTATCCAAGTTGATCAAAGCCGATATCCATTCATTTAAGGTTCCGTTGAGAGCGATTTGTAATGTGCAGTTTCTACATTTATATGAGGTTCTTGATGTTGAAAGACTTCGAGTCGTCGATGGCTCAACGTTTACTGAATCACCAGGAACAAATCCTCAAGCTACTGTAATGATGATGGGAAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAGATTGGCTGCCAAAAGCGTCCTGAAAGGCGTGAAAAATGGTCGAAAAAGGGAATTAGCGGCGGTTTCCAGTCCGCCGCATAACTGCTTGTTGCAAAGCAGTTATGTGGCGATTTTTTTGGACGTAACGCCGGTGGAAATTTGCGGTGGGATTTTGCGCGGCCATTTTCCGTCGGAAGTGAACAAAATCAAGTTGGTCAAGTTGTTTCTGAAGTGCTTGGGGAATGTCGTTTGA 2766 0.397 MASVGTVKFLLCFVLWLWNCNFLPPCQGKQQDYPFIKKASSFSSPSISTTSLNKAYDYIIIGGGTAGCPLAATLSQNFSVLLLERGGVPFSNPNVTFLENFHITLADTSPTSASQYFLSTDGVFNARARVLGGGSAINAGFYTRASSRFINKVGWDKKLVNESYPWVEKQIVHRPKFSPFQSALRDSLIDTGVSPYNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLVHATVQKIVFDTTGKRPKVVGVIFNDENGKQHEAMLGNDVQSEVILSSGAIGSPQMLLLSGIGPKDELQNLNISVVLNNPFVGKGMIDNPMNNIFVPSNRPVDVSLIQTVGITKKGVYIEASSGFSQSNSSIHCHHGIVSAEIGQLSTIPPKQRSIEAIQAYVKSKRDIPVEAFNGGFVLTKVGSAWSVGELKLNNTNVNDNPTITFNYFSHPYDLQRCVEGIRMTIKVVQSEHFTNYTLCKKESMEKILNISVKANVNFIPRHANDTTSLEQFCKDTVITIWHYHGGCHVGKVVDPDYKVLDVERLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGRLAEWKDKLTRTRMLLMKSWDNKLTRLLLKMEGQVNQNQNVADEVLGSQVNQTPAEVMCITLKSFHLKCDYDLWDAKAESFSLNQWIKAAKQRGIKYLNLHMSNVLLIPTTLFCCKTLVVLKLTNMRVRKMYCCSVDLPSLKTLDLDSVSFHAMENLMRLILGCPILENLITVYVEARVEHAVGGYFKPLSKLIKADIHSFKVPLRAICNVQFLHLYEVLDVERLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGRLAAKSVLKGVKNGRKRELAAVSSPPHNCLLQSSYVAIFLDVTPVEICGGILRGHFPSEVNKIKLVKLFLKCLGNVV 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00479 921 Pfam Leucine Rich Repeat 722 747 IPR013101 -
Tsu08g00479 921 SUPERFAMILY RNI-like 669 799 - -
Tsu08g00479 921 SUPERFAMILY FAD-linked reductases, C-terminal domain 324 526 - -
Tsu08g00479 921 SUPERFAMILY FAD/NAD(P)-binding domain 799 842 IPR036188 -
Tsu08g00479 921 Pfam GMC oxidoreductase 56 328 IPR000172 GO:0016614|GO:0050660
Tsu08g00479 921 PANTHER OSJNBA0019K04.7 PROTEIN 799 847 - -
Tsu08g00479 921 PANTHER OSJNBA0019K04.7 PROTEIN 2 585 - -
Tsu08g00479 921 Gene3D - 56 569 IPR036188 -
Tsu08g00479 921 SUPERFAMILY FAD/NAD(P)-binding domain 51 580 IPR036188 -
Tsu08g00479 921 Pfam GMC oxidoreductase 426 570 IPR007867 GO:0016614
Tsu08g00479 921 Pfam GMC oxidoreductase 800 832 IPR007867 GO:0016614
Tsu08g00479 921 ProSitePatterns GMC oxidoreductases signature 2. 287 301 IPR000172 GO:0016614|GO:0050660
Tsu08g00479 921 Gene3D Ribonuclease Inhibitor 618 795 IPR032675 -
Tsu08g00479 921 Gene3D - 796 845 IPR036188 -
Tsu08g00479 921 Gene3D - 173 519 - -
Tsu08g00479 921 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 799 847 - -
Tsu08g00479 921 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00479 Tsu-Chr8 4792687 4813731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00479 799 843 Miscellaneous Gene Families AT3G56060 71.111 1.03e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00479 K15403 - gmx:100788704 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05368 02 62216255 62221396 Tsu08g00479 08 4792687 4813731 PCT