Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00472 atgGGCTTTAAGCTAAATGTGTTGCTATTAGTGATACTTGCAACTTCATTGATTGATTATAGTGAAGCTTCTGTATCATATGATTATAAAGCTATAACTATTAATGGACAAAGAAGAATATTACTTTCTGGGTCTATTCATTATCCCAGAAGTACCCCTGAGatgtgGCCAGATCTTATCCAAAAGGCTAAAGATGGAGGTTTAGATGTGATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGAGGGGAACTATGATTTGGTGAAGTTCATAAAGCTAGTGCAGCAAGCAGGACTCTATGTTCATCTAAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTTGGaggttTTCCTGTTTGGCTGAAGTATGTTCCAGGTATCAGTTTCAGAACAGACAATGGACCATTTAAGTTTCAAATGCAAAGATTTACTACAAAGATTGTGAATATAATGAAAGCTGAAAGATTGTATGAGTCTCAAGGTGGTCCAATAATTCTATCTCAGATTGAAAATGAATATGGACCTATGGAGTATGAACTTGGTGCTCCTGGTAAAGCCTATACTCAATGGGCAGCACATATGGCTGTAGGACTAGGTACCGGTGTTCCGTGGGTCATGTGCAAACAAGATGATGCTCCTGATCCTGTTATTAATACTTGCAATGGTTTCTATTGTGATTATTTCTCTCCAAACAAAGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACCGGCTTTGGAGGTCCGGTTCCTCATAGACCTGCCGAAGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGAGGATCCTTTATCAATTATTACATGTATCATGGTGGAACAAATTTTGGAAGAACTGCCGGTGGTCCCTTTATTGCTACAAGCTATGATTATGATGCACCTCTCGATGAATACGGGCTTCTGAGGCAGCCAAAGTGGGGTCATTTGAGGGATTTACACAGAGCAATAAAACTCTGCGAACCTGCTTTAGTTTCTGCAGATCCTGCTGTAACTCGTCTCGGAAACTATCAAGAGGCTCATGTTTTTAAATCGAAATCCGGAGCTTGTGCTGCATTCCTTGCAAACTACAATCCACGATCTTATGCAACAGTGTCGTTTGGGAATCAGCATTACAACTTACCTCCTTGGTCTGTTAGCATTCTTCCTAACTGTAAACACACTGTTTATAACACTGCAAGGGTTGGTTCTCAAAGTGCGACGATGAAGATGAGCCCTGTTCCTATTCATGGAGGACTCTCTTGGAAAGCATTTAATGAAGAGACAACAACTACTGATGATAGTTCATTCACTGTGACTGGTTTGTTGGAGCAGATAAATGCAACGAGAGATTTATCTGACTATTTGTGGTACTCTACAGATGTTGTGATCAATTCCAATGAAGGATTTTTTAGGAACGGAAAGAATCCTGTTCTTACAGTATTATCTGCTGGCCATGCTTTGCATGTTTTTATCAATGGTCAGCTCTCAGGAACTGTATATGGAAGCGTGGATTTCCCCAAACTAACTTTTAGTGAAAGTGTGAAGCTTAGAGCTGGCGTTAACAAAATCTCCCTTCTGAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTCGGTCCAATCACGTTGAACGGACTCAATGAGGGGAGAAGGGACTTAACATGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGCGAAGCTTTGAGTCTCCATTCTCTCAGTGGAAGTTCCTCCGTTGATTGGCTTCAAGGATATTTAGTTTCTCGAAAGCAGCCATTGACTTGGTTCAAAACAACTTTTGACGCACCGGCTGGAGTTGCACCATTGGCTTTAGACATGAACAGCATGGGAAAAGGTCAAGTTTGGTTAAACGGACAGCATCTCGGACGATACTGGCCTGCTTATAAAGCATCTGGTTCTTGTGATTATTGCAATTATGCAGGAACTTATAATGAGAAAAAATGTGGAACTAACTGCGGCGAGGCTTCTCAACGATGGTatgaaatatattatatgtaG 2091 0.4046 MGFKLNVLLLVILATSLIDYSEASVSYDYKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKFQMQRFTTKIVNIMKAERLYESQGGPIILSQIENEYGPMEYELGAPGKAYTQWAAHMAVGLGTGVPWVMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTGFGGPVPHRPAEDLAFSIARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLRDLHRAIKLCEPALVSADPAVTRLGNYQEAHVFKSKSGACAAFLANYNPRSYATVSFGNQHYNLPPWSVSILPNCKHTVYNTARVGSQSATMKMSPVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINSNEGFFRNGKNPVLTVLSAGHALHVFINGQLSGTVYGSVDFPKLTFSESVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGEALSLHSLSGSSSVDWLQGYLVSRKQPLTWFKTTFDAPAGVAPLALDMNSMGKGQVWLNGQHLGRYWPAYKASGSCDYCNYAGTYNEKKCGTNCGEASQRWYEIYYM 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00472 696 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Tsu08g00472 696 PANTHER BETA-GALACTOSIDASE RELATED 6 693 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 Gene3D - 445 582 - -
Tsu08g00472 696 Gene3D - 289 417 - -
Tsu08g00472 696 SUPERFAMILY Galactose-binding domain-like 399 570 IPR008979 -
Tsu08g00472 696 Gene3D Glycosidases 18 288 - -
Tsu08g00472 696 SUPERFAMILY (Trans)glycosidases 25 341 IPR017853 -
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 642 658 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 615 629 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Tsu08g00472 696 PANTHER BETA-GALACTOSIDASE 6 693 - -
Tsu08g00472 696 Gene3D - 596 665 - -
Tsu08g00472 696 SUPERFAMILY Galactose-binding domain-like 579 659 IPR008979 -
Tsu08g00472 696 Pfam Beta-sandwich domain in beta galactosidase 344 415 IPR041392 -
Tsu08g00472 696 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00472 Tsu-Chr8 4697482 4703573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00472 1 693 Glycoside Hydrolase AT3G13750 79.772 0.0 1180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00472 - - gmx:100781074 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00472 08 4697482 4703573 Tsu08g00472 08 4697482 4703573 ECH
Tsu02g05371 02 62243828 62249097 Tsu08g00472 08 4697482 4703573 PCT