Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05371 ATGTGGAAAATGCCACCACTGGTTATTCTGCTACTTCTTCAGCTAGCATGTTCTTTGATTAGTTCAGCTACTGCATCTGTGTCTTATGACTCTAAAGCTATCACCATTAATGGCCAAAGAAGGATCCTCATTTCTGGATCCATTCATTATCCAAGAAGTACTCCTGagatGTGGCCAGATCTTATTCAGAAGGCTAAAGAAGGAGGTTTAGATGTGATTCAGACTTATGTTTTTTGGAATGGACATGAACCTTCACCTggcaaaTATTATTTTGAGGGGAACTATGATTTGGTGAAGTTCATAAAGTTGGTGCAGCAAGCTGGTCTTTATGTTCATCTAAGGATTGGTCCTTATGTTTGTGCTGAGTGGAATTTTGGGGGTTTTCCTGTTTGGCTTAAGTACATTCCTGGTATCAGTTTTAGAACTGACAATGGTCCATTTAAGTTTCAAATGCAAAAATTTACTGAGAAGATTGTTGGTATGATGAAAGAAGAAAGGTTATATGAGACTCAGGGAGGTCCAATAATTTTATCACAGattgaaaatgaatatGGACCTGTGGAGTATGAAATTGGTGATCCTGGTAAATCCTATACAAAGTGGGCAGCAGATATGGCTATAGGACTTGGTACCGGAGTTCCGTGGATCATGTGCAAGCAAGACGATGCTCCTGATCCTGTCATTAACACCTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATGCGGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACCGAGTTTGGAGGTCCGGTACCTTACCGACCTGCTGAAGACTTGGCATTTTCAATTGCAAGATTTATACAAAAAGGAGGATCATTTATCAATTACTACATGTATCATGGTGGAACAAATTTTGGGAGAACTGCTGGTGGTCCTTTCATTGCTACAAGCTATGACTATGACGCACCACTTGATGAATATGGATTGCTTAGGCAACCGAAATGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTCCGAACCGGCTTTAGTGTCTGGAGATCCTACCGTTACACGGATTGGAAACTATCAAGAGGCTCATGTCTTTAAATCGAAGTTTGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCGACGGTGGCATTTGGAAATATGCATTACAATTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAAAACACCGTTTATAACACTGCAAGGGTTGGTTCACAGAGTGCCCAGATGAAGATGACTCGTGTTCCTATCCACGGTGGACTCTCTTGGCAAGTGTTTACTGAACAAACAGCATCTACCGATGATAGTTCCTTCGTCATGACTGGACTATTGGAACAGTTAAATACAACGAGAGATTTGACCGATTACTTGTGGTACTCCACAGAtGTTGTGATTGATCCCAATGAAGGATTTTTGAGAAGTGGAAAGGATCCTGTTCTTACAGTGTTATCAGCTGGGCATGCTTTACATGTTTTCGTCAACGGTCAGCTTTCAGGAACTATATATGGAAGCTTAGAATTCCCCAAGCTAACATTTAGCCAGAATGTGAAGCTCAGACCTGGCGTCAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGCCCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGACCAATTACATTAAATGGTCTCGATGAGGGTAGACGGGACTTGTCTTGGCAAAAATGGTCATACAAGGTTGGTCTCAATGGTGAAGCCTTGAGTCTTCATTCTCTCAGTGGAAGTTCCTCAGTGGACTGGGTTCAAGGGAGTTTAGTTTCTCAAATGCAGCCACTGACTTGGTACAAAACTACTTTCGATGCCCCAGATGGAATTGCACCGTTTGCTTTAGACATGGGAAGTATGGGAAAAGGACAAGTTTGGTTAAATGGACAGAATCTCGGCCGTTATTGGCCTGCTTATAAAGCATCCGGTACCTGTGGTAACTGTGACTATGCAGGAACATATAACGAGAACAAATGTAGAAGTAACTGTGGCGAGGCTTCTCAAAGATGGTACCATGTTCCTCATTCATGGCTGAAGCCAACCGGAAATTTATTGGTTGTGTTTGAAGAATTGGGTGGCGACCCTAATGGGATATTTTTAGTTAGAAGAGATATAGATAGTGTATGTGCTGATATTTACGAGTGGCAACCAAATCTTATAAGTTATCAGATGCAAACTTCTGGCAAAGCTAACAAACCTGTTAGACCAAAAGCACATTTATCATGTGGCCCTGGACAGAAAATATCGGCAATCAAATTTGCTAGCTTTGGTACTCCGGTAGGGTCTTGTGGAAACTTTCATGAAGGAAGTTGTCATGCTCACAAGTCTTATAACGCCTTTGAAAAGAATTGCATTGGACAGAACTGGTGCAAAGTAACCGTGTCGCCTGAAAATTTTGGAGGAGATCCATGTCCTAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTACCTGA 2523 0.4154 MWKMPPLVILLLLQLACSLISSATASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTEKIVGMMKEERLYETQGGPIILSQIENEYGPVEYEIGDPGKSYTKWAADMAIGLGTGVPWIMCKQDDAPDPVINTCNGFYCDYFSPNAAYKPKMWTEAWTGWFTEFGGPVPYRPAEDLAFSIARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLSEPALVSGDPTVTRIGNYQEAHVFKSKFGACAAFLANYNPKSYATVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQSAQMKMTRVPIHGGLSWQVFTEQTASTDDSSFVMTGLLEQLNTTRDLTDYLWYSTDVVIDPNEGFLRSGKDPVLTVLSAGHALHVFVNGQLSGTIYGSLEFPKLTFSQNVKLRPGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLNGLDEGRRDLSWQKWSYKVGLNGEALSLHSLSGSSSVDWVQGSLVSQMQPLTWYKTTFDAPDGIAPFALDMGSMGKGQVWLNGQNLGRYWPAYKASGTCGNCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQTSGKANKPVRPKAHLSCGPGQKISAIKFASFGTPVGSCGNFHEGSCHAHKSYNAFEKNCIGQNWCKVTVSPENFGGDPCPNVMKKLSVEAICT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05371 840 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 644 660 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 617 631 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 Gene3D - 440 584 - -
Tsu02g05371 840 SUPERFAMILY (Trans)glycosidases 27 342 IPR017853 -
Tsu02g05371 840 Pfam Galactose binding lectin domain 762 839 IPR000922 GO:0030246
Tsu02g05371 840 SUPERFAMILY Galactose-binding domain-like 401 572 IPR008979 -
Tsu02g05371 840 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
Tsu02g05371 840 Gene3D - 749 840 IPR043159 -
Tsu02g05371 840 SUPERFAMILY Galactose-binding domain-like 581 746 IPR008979 -
Tsu02g05371 840 PANTHER BETA-GALACTOSIDASE 5 834 - -
Tsu02g05371 840 ProSiteProfiles SUEL-type lectin domain profile. 754 840 IPR000922 GO:0030246
Tsu02g05371 840 Gene3D Glycosidases 20 343 - -
Tsu02g05371 840 PANTHER BETA-GALACTOSIDASE RELATED 5 834 IPR001944 GO:0004553|GO:0005975
Tsu02g05371 840 Pfam Glycosyl hydrolases family 35 34 338 IPR031330 -
Tsu02g05371 840 Gene3D - 600 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05371 Tsu-Chr2 62243828 62249097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05371 4 840 Glycoside Hydrolase AT3G13750 79.331 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05371 - - gmx:100811187 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05371 02 62243828 62249097 Tsu02g05371 02 62243828 62249097 ECH
Tsu02g05371 02 62243828 62249097 Tsu08g00472 08 4697482 4703573 PCT