Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00445 ATGAACGGTGGCGATGATGTTGTTGTAGCTTCGGAGGAACCATTGAAACCGTTGGAGTGGAAATTCTCACAGGTTTTTGGTGAACGTGCGGCTGGTGAAGAAGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTCGAACGGACAGATTCAAAAGATCAGCATGGATCAAGGAGGGATTTGGAGAGTACAGACTATTCTAGTAGCCGGCATCCTGAGTTTCGCTATAAAACAGAATTTCAGAGTCACGAGCCTGAGTTTGATTATCTCAAGAGTTtggaaatagaagaaaaaattaacaaaatcaaGTGGTGCCAAACAGCTAATGGCGCTGTATTCCTTCTATCTACAAATGACAAAACTATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTGAAGAAAATTTCTGACATGAATATTGACCCTTCAAAGGCAATGGGAAATGGATCTATTGCTAGTTCAAGTAGTTCAAATAGTTCTAAGCCACATCTTGCAAATGGAGGATCTTCCGAGAAATCATATAATTATCTTAGCAATGATTTCTCATTTCCACCAGGAGGCTTACCTTCGCTAAGATTGCCCTCGGTAGTAGTTAGCCATGAGACCAGTCTGTTGGCTCGATGTCGTAGAGTATATGCACATGCTCATGACTATCACATCAATTCTATTTCAAATAACAGTGATGGAGAAACTTTCATATCGGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTCGATGTAAAGCCTACAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACGCATTGTAATACACTGGCATATAGCAGTTCAAAGGGCTCAATCCGTCTTATTGACTTGCGGCAGTCAGCGTTATGCGACTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGCTCCAGATCATTTTTCACAGAGATTATTGCTTCTATATCGGATATAAAATTTGCAAAGGAGGGAAGATATATACTCAGTCGTGATTACATGACTCTGAAGTTATGGGACATTAATATGGATTCCGGCCCAGTTTCTACATTCCGTGTTCACGAGTATTTAAGGCCAAAGCTATGTGATTTATACGAAAACGATTCAATTTTTGATAAGTTTGAGTGTTGTCTGAGTGGTGATGGATCGCGAGTTTCAACCGGTTCTTACAGCAATCTATTCCGCGTGTTTGGTTGTGCCCCGGGAAGTACAGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACACCGTCAAGGCCATCTAGATCACTCGGAAACAGTTTAACAAGAGTTGTAAGACGCGGAGCTGAGAACACCGGTCTTGACGCAAATGgaaattcttttgattttacaACAAAGTTGCTACACTTAGCATGGCATCCAAGTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCATGA 1551 0.4004 MNGGDDVVVASEEPLKPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSKDQHGSRRDLESTDYSSSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDPSKAMGNGSIASSSSSNSSKPHLANGGSSEKSYNYLSNDFSFPPGGLPSLRLPSVVVSHETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKEGRYILSRDYMTLKLWDINMDSGPVSTFRVHEYLRPKLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAENTGLDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00445 516 Gene3D - 35 205 IPR015943 GO:0005515
Tsu08g00445 516 PIRSF PPA2_B55 9 516 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 516 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 Gene3D - 216 514 IPR015943 GO:0005515
Tsu08g00445 516 SUPERFAMILY WD40 repeat-like 39 508 IPR036322 GO:0005515
Tsu08g00445 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Tsu08g00445 516 MobiDBLite consensus disorder prediction 443 463 - -
Tsu08g00445 516 MobiDBLite consensus disorder prediction 69 89 - -
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Tsu08g00445 516 MobiDBLite consensus disorder prediction 165 188 - -
Tsu08g00445 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Tsu08g00445 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Tsu08g00445 516 MobiDBLite consensus disorder prediction 157 188 - -
Tsu08g00445 516 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 516 - -
Tsu08g00445 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Tsu08g00445 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Tsu08g00445 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Tsu08g00445 516 SMART WD40_4 274 314 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00445 Tsu-Chr8 4383204 4390902 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00445 K04354 - gmx:100799449 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00445 08 4383204 4390902 Tsu02g05392 02 62456681 62464708 ECH
Tsu08g00445 08 4383204 4390902 Tsu08g00445 08 4383204 4390902 ECH
Tsu02g05392 02 62456681 62464708 Tsu08g00445 08 4383204 4390902 PCT