Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05392 atGAACGGTGCTGAGGTTGTTGCAGCTCCGGCGGGTCCACCGGTTCCTCTTGACTGGAAATTCTCTCAGGTGTTCGGTGAACGTACGGCTGGTGAAGAGGTTCAAgaagTGGACATAATTTCTGCTATCGAATTTGACAAGTCCGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTCGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGCGAATCTAGAAGGGATTCAGAGAGGATGGACTATTCTCTCGGCAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAAAGTCACGAGCCCGAGTTTGACTATCTTAAGAGTTTGGAGATAGAAgagaaaatcaacaaaatcagATGGTGCCAAATCGCTAATGGTGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTGCTGAGATGAATGTCGACCCTTCGAAATCAATGGGAAATGGCAGTACTGCTAGTTCAAGTAATTCAATTAGTGCTAGGCCAAGCCATGAAAATGGAGGATTTCCAGATTCAGATAGATCGTTCAATTATCTAAGCTCCGACTTTTCATTTCCACCGGGAGGCATACCATCACTAAGATTACCCGTGGTAGTAAGTAGCCACGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTTTACGCTCATGCACACGATTATCATATCAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCTGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATAAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATCTGACAGAGGTTATAACATCAGCAGAGTTCCACCCTACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTAATTGACTTGCGGCAATCAGCATTATGCGATTCTCATGCCAAACTGTTTGAGGAACAGGAGGCCCCAGGATCCCGATCATTTTTCACAGAGATTATTGCTTCCATATCTGACATAAAGTTTGGGAAGGATGGACGATACATTCTAAGTCGTGATTACATGACTTTAaagTTATGGGACATTAATATGGATTCAGGTCCTGTTGCAACTTACCAGGTTCATGAGTATCTTAGACCAAAGCTTTGTGATTTGTATGAAAACGATTCAATCTTTGACAAGTTCGAGTGTTGTCTGAGTGGTGACGGATTGCGGGTAGCAACTGGTTCTTACAGGTGTGTGATACAAACTTAA 1287 0.4149 MNGAEVVAAPAGPPVPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSLGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKIAEMNVDPSKSMGNGSTASSSNSISARPSHENGGFPDSDRSFNYLSSDFSFPPGGIPSLRLPVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYRCVIQT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05392 428 Gene3D - 215 428 IPR015943 GO:0005515
Tsu02g05392 428 Gene3D - 35 198 IPR015943 GO:0005515
Tsu02g05392 428 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 104 118 IPR018067 -
Tsu02g05392 428 MobiDBLite consensus disorder prediction 156 185 - -
Tsu02g05392 428 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 2 425 - -
Tsu02g05392 428 MobiDBLite consensus disorder prediction 161 181 - -
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 320 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 44 64 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 321 348 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 349 376 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 264 291 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 120 148 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 236 263 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 91 119 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 377 402 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 403 428 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 SMART WD40_4 104 144 IPR001680 GO:0005515
Tsu02g05392 428 SMART WD40_4 275 315 IPR001680 GO:0005515
Tsu02g05392 428 SMART WD40_4 30 65 IPR001680 GO:0005515
Tsu02g05392 428 SMART WD40_4 225 264 IPR001680 GO:0005515
Tsu02g05392 428 SMART WD40_4 334 372 IPR001680 GO:0005515
Tsu02g05392 428 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Tsu02g05392 428 PIRSF PPA2_B55 13 428 IPR000009 GO:0000159|GO:0019888
Tsu02g05392 428 SUPERFAMILY WD40 repeat-like 38 426 IPR036322 GO:0005515
Tsu02g05392 428 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 234 248 IPR018067 -
Tsu02g05392 428 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 2 425 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05392 Tsu-Chr2 62456681 62464708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05392 K04354 - gmx:100790801 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00445 08 4383204 4390902 Tsu02g05392 02 62456681 62464708 ECH
Tsu02g05392 02 62456681 62464708 Tsu02g05392 02 62456681 62464708 ECH
Tsu02g05392 02 62456681 62464708 Tsu08g00445 08 4383204 4390902 PCT