Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00395 ATGCTTTCTTTTACAGTTTCTCGTTTCCCTTCAACACAATCATTACCACTCCACAAAACATCACCAACAACTACAAACGCAGCTTTTCCTATTAACCAACTACAAAACCTCAACACTCAACACAAATTCAATTTCCAACAAACCGCTTCTTCTTCTAGCGACAACAACAAAGCTGAAGACTTTCTCAGAGAAAACGCTAGTAACAGAGTAAACCCAATTGAGGGTCTTAATGATGGTGTTCTATttggaagaaagaagaaaatgggTAAGGAAAAAGTTTCCTGGGTTTGTAGCAATTGTGGGTATACTGCTGGACAATGGTGGGGTGTGTGTCGATCATGTAGTGTTTCTGGTACTATGAAAGAGTTTCATGAAGTCAAAGGTAGTGAGAGTAATGTTAAAGTTAGTGGCTTTTCTGTTATGGAGGATGGTTTGAGGTCTTGGCTTCCTGAGAAGAATGGTGAGTTGCGTCCTATGAGATTGTCTGAGGTTAATAGGGGTGTTGATCATCTGCATTGGAGAATTCctttGTCTGGTCCTCTTGGAAACGAAGTTTCTAGAGTGCTTGGTGGTGGTCTTGTACCAGGCTCGTTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTTTTGTTGCAGATGGCTGCACTAATTGCCGAAGGGCTCAAAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACCGAGCAGACCGCCTAACAATTGGAtcagatatttatttatattcaaGTACTGATATTGAGGACATATTGAGGAAAGTTCAGTATCTTTCCCCTCGGGCTCTAGTTATTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATACAGGTGAAGGAATGTACTTCGGCTTTACTGCGATTTGCAAAGACAACAAACATCCCGGTTCTATTGATTGGACATGTGACAAAATCTGGAGATATAGCAGGACCTCGTGTCTTGGAACATATCGTTGATGTTGTATTGTATATGGAAGGTGAGAAGTTCACTTCCTATCGTATGCTTCGAGCTGTGAAAAACCGATTTGGATCAACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTAGAGGTTGTTTCAAATGCCAGTGAAATGTTTCTTAGCGAGCAAGACATAGATTCAGATATTTTAGCTGGACTAGCTGTAGCTGTAATAATGGACGGGTCTCGAACATTTCTTATTGAAATTCagGCACTTTGTCTTTCTGGTTCGACAGGATCAAGGCAATTTAATGGTATCCAACCAAATAGAGCTGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTTCGTCTCCAAGAACATGCGGTGTTTTTAAATGTTGTTAGTGGATTGACACTGACCGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCTTGGAGATCCCTATTCCAAATGACGTTGCATTCATCGGTGAAATTGGACTTGGTGGTGAGCTTCGCATGGTTACTAGAATGGAAAAAAGGGTAATCACGGTGGCGAAATTGGGTTACAGAATGTGTATAGTACCAAAAGCAGCTGAAAAACTTTTAGGAACTGAAGGCTTAGAAAATATCAAAGTTGTTGGTTGCAGGAATCTGAAAGATGTTATCAACACTATATTTCCTAATGTCATGAAAAGAAGCAAGTGA 1731 0.4015 MLSFTVSRFPSTQSLPLHKTSPTTTNAAFPINQLQNLNTQHKFNFQQTASSSSDNNKAEDFLRENASNRVNPIEGLNDGVLFGRKKKMGKEKVSWVCSNCGYTAGQWWGVCRSCSVSGTMKEFHEVKGSESNVKVSGFSVMEDGLRSWLPEKNGELRPMRLSEVNRGVDHLHWRIPLSGPLGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQMAALIAEGLKDGEASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSTDIEDILRKVQYLSPRALVIDSVQTVYLKGIMGSPGGIIQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKFTSYRMLRAVKNRFGSTDELGVFEMSHSGLEVVSNASEMFLSEQDIDSDILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQPNRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLTETAGDLAIAAAICSSCLEIPIPNDVAFIGEIGLGGELRMVTRMEKRVITVAKLGYRMCIVPKAAEKLLGTEGLENIKVVGCRNLKDVINTIFPNVMKRSK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00395 576 PANTHER DNA REPAIR-LIKE PROTEINRADA 18 568 - -
Tsu08g00395 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 378 IPR027417 -
Tsu08g00395 576 PANTHER DNA REPAIR PROTEIN RADA 18 568 - -
Tsu08g00395 576 Pfam Rubredoxin metal binding domain 95 122 IPR041166 -
Tsu08g00395 576 TIGRFAM sms: DNA repair protein RadA 88 563 IPR004504 GO:0003684|GO:0005524|GO:0006281
Tsu08g00395 576 PRINTS DNA repair protein radA signature 187 215 - -
Tsu08g00395 576 PRINTS DNA repair protein radA signature 322 350 - -
Tsu08g00395 576 PRINTS DNA repair protein radA signature 97 121 - -
Tsu08g00395 576 PRINTS DNA repair protein radA signature 283 307 - -
Tsu08g00395 576 PRINTS DNA repair protein radA signature 357 383 - -
Tsu08g00395 576 PRINTS DNA repair protein radA signature 432 455 - -
Tsu08g00395 576 Pfam AAA domain 188 331 - -
Tsu08g00395 576 SUPERFAMILY Ribosomal protein S5 domain 2-like 364 568 IPR020568 -
Tsu08g00395 576 Gene3D - 403 576 IPR014721 -
Tsu08g00395 576 ProSiteProfiles RecA family profile 1. 171 327 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu08g00395 576 SMART AAA_5 195 353 IPR003593 -
Tsu08g00395 576 Pfam Subunit ChlI of Mg-chelatase 450 539 - -
Tsu08g00395 576 Gene3D - 184 386 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00395 Tsu-Chr8 3847610 3854020 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00395 K04485 - gmx:100794165 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00395 08 3847610 3854020 Tsu08g00395 08 3847610 3854020 ECH
Tsu02g05407 02 62592870 62600123 Tsu08g00395 08 3847610 3854020 PCT