Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05407 ATGAACTTCCTCAGAACAATCTTCATCCACCATATTCACAAACGCCACCATTTCCTCAACCCCAAATGCTTCTTTTCATCTCTAGTTTCATCCTcaccaacaccaccaccaccggaGGAGGATACAGAAACCCTACATTCCACCGATCCTAGAAACGAATCCACCAATAGTTGGAGTATCTACGGTAATGTAGTTGTGAAACCGACAATCAACGATTACAGTGACGAAAAAACCGAGGAGGAAAAACCAACTGAGAATGAAAATGGGAgcatgatgaatttgaagaacaGAAGTGTAATTAGGACGGCAACGCCAATGCCGACAAAGAGGGGTACTGGGAAGGTGAAAACTCAGTGGGTTTGTAGTAATTGTGGGTATACTGCTGGAAAGTGGTGGGGTAATTGTCCTTCTTGTACAGTTGGAATAATGAAGGAGTTTCATGAAGCAAAACTAAGTCATGGTGTTGAATATAATAAGGTTAGAAGTGGTATATCAGTTTCTGAAGATGCAATGGGAGCTTGGCTCCCACAGAGAGGTGGTCAATTGCGTCCTGTTAAGTTGAGTGAGGTTAATCGCGGATTCAACGAGAAGGGTTGGCGATTTCCTTTGTCTGGCCCTTTTGGAGATGAAGTTTCTATTGTGCTTGGTGGTGGTCTTGTACCAGGCTCTTTGAATTTATTTAGTGGCGATCCTGGTGTTGGGAAGAGTACACTGTTGTTGCAGATGGCAGCATTGGTAGCAGATGGATGCAATGGTAGTGACGGTGAGGCCCTTCCAGTTGTATACGTCTCCGGTGAAGAGAGTCTTCAGCAAATTGCTCACAGAGCAGATCGCCTTGGGATTAAATCTGATATTTATTTGTATTCAAGTACTGATATTGAGGACATATTAAGGATAGCTCAGTCTCTCCCGATTCGAGCTCTGGTTGTTGATTCAATACAAACTGTTTATTTGAAAGGAATAGCAGGAAGTGCTGGAGGAGTTACGCAGGTGAAAGAATGTACTTCGGCTTTGATGCGATTTGCTAAAACAACTAACATTCCAGTACTTTTGATTGGGCATGTGACAAAATCTGGAGACATAGCTGGGCCTCGTGTTCTGGAACATATTGTTGATGTTGTCTTGTACTTAGAAGGTGAGAGGTTCACTTCATATCGAATGCTTCGTGCTGTGAAAAATCGGTTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCAGAATCAGGATTTAAGGCTGTTTCCAATGCCACTGAAATGTTTCTCACTGAACAAGACCCTGATTCAGATGTTTTAGTTGGCTTAGCTTTTACTGTAATAATGGATGGTTCAAGAACTTTCATAATTGAAGTTCAGGCACTCTGCCTTTCAGAAGAATCAACTTCAAGAGTAACTAATGGAATTGAAACAAATAGAGCTAACATGATCAAATGTGTTCTTATAAAGCAAGCAGGTCTTAATATCGAAGTAAATTCTGTGCATTTGAATGTTGTTAGTGGATTGACATTGGCTGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTACCCTATTCCAAAGGGCATTGCATTCATTGGTGAAATTGGCCTTAGCGGAGAGCTTCGCACGGTTCCTAGAATCGACAAAAGAGTTCACGCACTGTCAAAGTTGGGTTATAAAACCTGTGTAGTGCCGAAGCAAGCTGTAAAAGCTTTAGGAGCTGAAGGTCTAGAAAATATTGAAGTAATAGGTTGCAAGAATCTGAAGGAGTTTATTAACATAGTATTCAGTAGATAA 1797 0.4051 MNFLRTIFIHHIHKRHHFLNPKCFFSSLVSSSPTPPPPEEDTETLHSTDPRNESTNSWSIYGNVVVKPTINDYSDEKTEEEKPTENENGSMMNLKNRSVIRTATPMPTKRGTGKVKTQWVCSNCGYTAGKWWGNCPSCTVGIMKEFHEAKLSHGVEYNKVRSGISVSEDAMGAWLPQRGGQLRPVKLSEVNRGFNEKGWRFPLSGPFGDEVSIVLGGGLVPGSLNLFSGDPGVGKSTLLLQMAALVADGCNGSDGEALPVVYVSGEESLQQIAHRADRLGIKSDIYLYSSTDIEDILRIAQSLPIRALVVDSIQTVYLKGIAGSAGGVTQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGERFTSYRMLRAVKNRFGSTDELGVFEMSESGFKAVSNATEMFLTEQDPDSDVLVGLAFTVIMDGSRTFIIEVQALCLSEESTSRVTNGIETNRANMIKCVLIKQAGLNIEVNSVHLNVVSGLTLAETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTVPRIDKRVHALSKLGYKTCVVPKQAVKALGAEGLENIEVIGCKNLKEFINIVFSR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05407 598 Pfam AAA domain 216 359 - -
Tsu02g05407 598 Gene3D - 213 412 IPR027417 -
Tsu02g05407 598 Pfam Rubredoxin metal binding domain 119 138 IPR041166 -
Tsu02g05407 598 Gene3D - 421 598 IPR014721 -
Tsu02g05407 598 Pfam Subunit ChlI of Mg-chelatase 481 567 - -
Tsu02g05407 598 SMART AAA_5 221 381 IPR003593 -
Tsu02g05407 598 PANTHER DNA REPAIR PROTEIN RADA 1 598 - -
Tsu02g05407 598 MobiDBLite consensus disorder prediction 72 86 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 350 378 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 460 483 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 121 145 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 213 241 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 385 411 - -
Tsu02g05407 598 PRINTS DNA repair protein radA signature 311 335 - -
Tsu02g05407 598 TIGRFAM sms: DNA repair protein RadA 114 590 IPR004504 GO:0003684|GO:0005524|GO:0006281
Tsu02g05407 598 MobiDBLite consensus disorder prediction 71 90 - -
Tsu02g05407 598 ProSiteProfiles RecA family profile 1. 200 355 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu02g05407 598 PANTHER DNA REPAIR-LIKE PROTEINRADA 1 598 - -
Tsu02g05407 598 SUPERFAMILY Ribosomal protein S5 domain 2-like 392 596 IPR020568 -
Tsu02g05407 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 406 IPR027417 -
Tsu02g05407 598 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05407 Tsu-Chr2 62592870 62600123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05407 K04485 - gmx:100791181 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05407 02 62592870 62600123 Tsu02g05407 02 62592870 62600123 ECH
Tsu02g05407 02 62592870 62600123 Tsu08g00395 08 3847610 3854020 PCT