Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00894 ATGTCTAGTCATTGGGGTATTGTAGTTTCAGATCCATGTCTTCAAAACCAGTTCACACAAGTTGAACTTCGAAGCTTAAAATCACAATTCATGAGTATGAGGAGAGAGAGTGGGAGGCTTACCATTGGAGAATTGGCTTCAAAGATGTCAAGATTGAAAGTTGTTGGAGAAAATCtaagtgaagaagaaagagattCTTATATCCATGATTTGTATCAGAATTCAGATGAAGATGTtgattttgaattgtttctCAAGGTTTACTTGAAACTGCAAACATTTGCAAGTTCTAGAACAGGAAACAATAATGCAAAAAACTCATCAGCATTTCTCAAAGTTGCCACTACTACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTTACACATATAAATAACTATCTTGCTGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTCGAATACGCAAAAGACGGTGTTCTTCTTTGTAAGCTTATTAATGTGGCAGTTCCGACGACTATCGATGAACGCGCAATCAATACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAACCACACACTATGCCTCAATTCTGCTAAAGCAATTGGATGTACAGTTGTTAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTGCTCGGATTGATTTCGCAGATTATTAAGATACAATTATTGGCGAATTTGAACCTAAAGAAAACTCCTCAACTTATGGAGTTAGTTGATGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAAAAAACAGAATATAAGAAGATTGTCACAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCACCGGAATACACTAATCAATCCACGTTGGCCGTGAAAAATCCTTTTGAAAGAGCAAAACTAGTTCTTGAACATGCGGAAAAGATGGGTTGTAAGCGATACTTAACTGCGAGAGATATAGTGGAAGGATCACCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAAATCAGGAATGGACTTTCAACTCTAGCAAAACAAAGTTCTCTTCTTGAATCATTGCTAGATGATACTCAAGATTCAAGAGAAGAGAGAGTTTTTCGCCTTTGGATTAATAGCCTTGGCAATTCAACATATATCAACAATGTCTTTGAGGATGTCAGAAACGGGTGGGTACTTTTAGAGACTCTTGACAAGGTGTCACCGGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATTAAAATGCCATTTAAAAAAGTTGAGAATTGTAACCAAGTTGTGAAAATTGGGAAACAACTTAAGTTTTCCTTGGTAAATATTGCTGGAAATGACATTGTGCAGggatataaaaaattaatactagcATATTTGTGGCAATTGATGAGATGCAATATACTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAGGAAATAATTGATGCTGATATTCTTCAATGGGCAAACACCAAAGTTAGAAGCTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGCATTTTTTTCTTGGAGCTTCTTAGTTCTGTGCAACCTAGAGCTGTGAATTGGGGTCTTGTAACAAAGGGAGTAACTGATCAGGAGAAAATGATGAATGCTACATACATTATCAGTATTGCAAGAAAGCTAGGATGTTCAATATTCTTGCTTCCTGAAGACATCACCGAGGTAAACCAGAAGATGATACTTACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACATCCTGTTGTTGAAGAAAGGACAAGTTCAGACAGTGAGAGTCAAGTGGAGACTATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCAGCAGAAGATAACACataa 1986 0.3545 MSSHWGIVVSDPCLQNQFTQVELRSLKSQFMSMRRESGRLTIGELASKMSRLKVVGENLSEEERDSYIHDLYQNSDEDVDFELFLKVYLKLQTFASSRTGNNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEYAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLMELVDDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNQSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIRNGLSTLAKQSSLLESLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEIIDADILQWANTKVRSSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPVVEERTSSDSESQVETISNSTLDDSASDFSAEDNT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00894 661 PANTHER FIMBRIN/PLASTIN 1 660 IPR039959 GO:0051015|GO:0051017
Tsu04g00894 661 CDD CH 518 623 IPR001715 GO:0005515
Tsu04g00894 661 Gene3D - 390 507 IPR036872 -
Tsu04g00894 661 Pfam Calponin homology (CH) domain 147 239 IPR001715 GO:0005515
Tsu04g00894 661 Pfam Calponin homology (CH) domain 396 498 IPR001715 GO:0005515
Tsu04g00894 661 Pfam Calponin homology (CH) domain 270 371 IPR001715 GO:0005515
Tsu04g00894 661 Pfam Calponin homology (CH) domain 519 622 IPR001715 GO:0005515
Tsu04g00894 661 MobiDBLite consensus disorder prediction 637 661 - -
Tsu04g00894 661 ProSiteProfiles Calponin homology (CH) domain profile. 269 372 IPR001715 GO:0005515
Tsu04g00894 661 ProSiteProfiles Calponin homology (CH) domain profile. 124 241 IPR001715 GO:0005515
Tsu04g00894 661 CDD CH 395 497 IPR001715 GO:0005515
Tsu04g00894 661 SMART ch_5 517 621 IPR001715 GO:0005515
Tsu04g00894 661 SMART ch_5 271 370 IPR001715 GO:0005515
Tsu04g00894 661 SMART ch_5 126 239 IPR001715 GO:0005515
Tsu04g00894 661 SMART ch_5 396 498 IPR001715 GO:0005515
Tsu04g00894 661 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 660 - -
Tsu04g00894 661 CDD CH 270 370 IPR001715 GO:0005515
Tsu04g00894 661 Gene3D - 120 246 IPR036872 -
Tsu04g00894 661 MobiDBLite consensus disorder prediction 633 661 - -
Tsu04g00894 661 Gene3D - 508 620 IPR036872 -
Tsu04g00894 661 ProSitePatterns Actinin-type actin-binding domain signature 2. 213 237 IPR001589 -
Tsu04g00894 661 Gene3D - 12 91 - -
Tsu04g00894 661 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Tsu04g00894 661 SUPERFAMILY EF-hand 16 95 IPR011992 -
Tsu04g00894 661 CDD CH 125 239 IPR001715 GO:0005515
Tsu04g00894 661 ProSitePatterns Actinin-type actin-binding domain signature 1. 396 405 IPR001589 -
Tsu04g00894 661 SUPERFAMILY Calponin-homology domain, CH-domain 122 620 IPR036872 -
Tsu04g00894 661 Gene3D - 247 375 IPR036872 -
Tsu04g00894 661 ProSiteProfiles Calponin homology (CH) domain profile. 515 623 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00894 Tsu-Chr4 8563592 8569375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00894 1 625 EF-hand Containing Proteins AT5G55400 66.188 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00894 - - gmx:100805133 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00894 04 8563592 8569375 Tsu08g00246 08 2211657 2216690 PCT