Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00077 ATGAATCCCGAATATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCCGGTGTTGGTAAATCATGCCTTCTTCTAAGATTTGCTGATGATTCATACATTGATAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGGACTGTTGAGCAGGATGGGAAGACAATTAAACTACAGATCTGGGATACTGCCGGACAAGAACGATTTAGGACAATAACGAGTAGCTACTATCGCGGGGCCCATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATCGACCGCTATGCTAGTGATAATGTTAACAAGCTTTTGGTTGGAAACAAGAGTGATCTGACTGCAAATAGAGCTGTCTCATATGATACGGCTAAAGAATTTGCAGATAATATCGGCATACcttttatggaaacaagtgcaAAAGATGCTACAAATGTGGAAGGCGCATTCATGGCCATGGCTGCTGCCATCAAGGATAGAATGGCGAGCCAACCATCCGCAAGCAATGCAAGGCCTCCAACAGTGCAGATTAAAGGACAACCAGTTGGCCAAAAAGGTGGGTGCTGCTCTTCCTAA 612 0.4134 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRAVSYDTAKEFADNIGIPFMETSAKDATNVEGAFMAMAAAIKDRMASQPSASNARPPTVQIKGQPVGQKGGCCSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00077 203 SMART rab_sub_5 9 172 - -
Tsu08g00077 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 163 IPR005225 GO:0005525
Tsu08g00077 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Tsu08g00077 203 ProSiteProfiles small GTPase Arf family profile. 2 178 - -
Tsu08g00077 203 MobiDBLite consensus disorder prediction 175 203 - -
Tsu08g00077 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Tsu08g00077 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Tsu08g00077 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Tsu08g00077 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Tsu08g00077 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Tsu08g00077 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Tsu08g00077 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 202 - -
Tsu08g00077 203 SMART arf_sub_2 1 177 - -
Tsu08g00077 203 PANTHER LD21953P-RELATED 6 202 - -
Tsu08g00077 203 Pfam Ras family 10 170 IPR001806 GO:0003924|GO:0005525
Tsu08g00077 203 SMART ran_sub_2 14 202 - -
Tsu08g00077 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Tsu08g00077 203 CDD Rab1_Ypt1 7 172 - -
Tsu08g00077 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 187 IPR027417 -
Tsu08g00077 203 ProSiteProfiles small GTPase Rab1 family profile. 4 203 - -
Tsu08g00077 203 Gene3D - 2 195 IPR027417 -
Tsu08g00077 203 SMART ras_sub_4 6 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00077 Tsu-Chr8 682282 685961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00077 K07874 - gmx:100306147 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00077 08 682282 685961 Tsu08g00077 08 682282 685961 ECH
Tsu08g00077 08 682282 685961 Tsu04g01901 04 20461470 20464951 PCT