Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01901 ATGAATCCTGAGTATGATTATCTGTTCAAGCTTCTTCTTATTGGAGACTCTGGTGTTGGAAAATCATGCCTTCTTCTGAGATTTGCGGATGACTCTTACATTGATAGCTACATCAGCACCATTGGAGTTGATTTTAAAATCCGCACCGTTGAGCAGGATGGGAAGACCATTAAGCTCCAGATTTGGGATACAGCTGGGCAAGAACGATTTAGAACAATCACCAGTAGCTACTACCGTGGGGCACATGGAATCATTATTGTTTATGACGTGACAGATGAAGAGAGCTTCAATAATGTAAAGCAATGGCTCAGTGAAATTGACCGCTATGCCAGTGATAATGTTAACAAGCTCTTGGTTGGCAACAAGTGTGATCTGGCAGAGAGTAGAGCTGTGCCATATGAAACAGCTAAAGCATTTGCAGATGAAATAGGCATTCcttttatggaaacaagtgcaAAGGATTCTACAAATGTCGAACAGGCATTTATGGCAATGGCTTCTTCAATCAAAGACAGAATGGCAAGCCAACCTACAAACAATGCAAGGCCTCCAACAGTGCAGATAAGGGGACAGCCAGTTGGGCAGAAGAGTGGGTGTTGCTCATCATAA 609 0.4154 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLAESRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKDRMASQPTNNARPPTVQIRGQPVGQKSGCCSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01901 202 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Tsu04g01901 202 Gene3D - 2 195 IPR027417 -
Tsu04g01901 202 ProSiteProfiles small GTPase Rab1 family profile. 4 200 - -
Tsu04g01901 202 SMART ran_sub_2 14 199 - -
Tsu04g01901 202 SMART ras_sub_4 6 172 - -
Tsu04g01901 202 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Tsu04g01901 202 PANTHER LD21953P-RELATED 6 201 - -
Tsu04g01901 202 SMART rab_sub_5 9 172 - -
Tsu04g01901 202 CDD Rab1_Ypt1 7 172 - -
Tsu04g01901 202 ProSiteProfiles small GTPase Arf family profile. 2 169 - -
Tsu04g01901 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 180 IPR027417 -
Tsu04g01901 202 TIGRFAM small_GTP: small GTP-binding protein domain 7 163 IPR005225 GO:0005525
Tsu04g01901 202 MobiDBLite consensus disorder prediction 172 202 - -
Tsu04g01901 202 PRINTS Transforming protein P21 ras signature 147 169 - -
Tsu04g01901 202 PRINTS Transforming protein P21 ras signature 9 30 - -
Tsu04g01901 202 PRINTS Transforming protein P21 ras signature 32 48 - -
Tsu04g01901 202 PRINTS Transforming protein P21 ras signature 50 72 - -
Tsu04g01901 202 PRINTS Transforming protein P21 ras signature 112 125 - -
Tsu04g01901 202 Pfam Ras family 10 170 IPR001806 GO:0003924|GO:0005525
Tsu04g01901 202 ProSiteProfiles small GTPase Ras family profile. 1 202 IPR001806 GO:0003924|GO:0005525
Tsu04g01901 202 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 201 - -
Tsu04g01901 202 SMART arf_sub_2 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01901 Tsu-Chr4 20461470 20464951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01901 K07874 - gmx:100813403 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00077 08 682282 685961 Tsu04g01901 04 20461470 20464951 PCT