Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00073 ATGGCGACAATTAACCCTTTTGATTTGTTGGGTGATGATGCTGAAGACCCTTCACAGTTGATTGCTGCTGAAAAACTGAAAGCGGCGGCTGCAGCGGCGGCGGCCCCTAAAAAGGGGATTGAACAAGGCAAGCAGACTGCTCCTAAGAAGGCAGCTCAGTTGCCTTCCAAACCTCTTCCTCCTTCTCAGGCTGTGAGGGAGGCCAGAAACGAGCCTTCTCGCGGTGGCCGTGGAGGCGCACGTGGATTTGGACGTGGTCGCGGTGGCGGCGGCTATGGTCGTGACTTTTCCAATGATGATAACCAATTGCCTGCTCCTCCTGCTAATCAAGGCTCTTTCGAAGGAGATTCTGGGAATCCCACTGAAAGACGAGGTTATGGTGCACCTCGTGGTTCTTATCGTGTTGGAGGCGACCGCCGCCGTGGAGGTTTCAGCAATGGTGAAGCTGGTGAAGAAGGCCGCCCACGTAGGACATTTGATCGCCACAGCGGATCTGGACGGGGTGGTGGATTCAAACGTGAAGGTGCTGGACGAGGCAATTGGGGAACTCAATCTGATGAAATTGCACAggTGACTGAGGAAGTGTCGAATGAACCTGAAAAGAATGTGGCTGAGGAGAAGCCTGCTGGTGAGGAAGATGCCGCAGCTGAAGGAAACAAGGATACTCCTGCTAATGAAGCTGAAGAGAAGGAGCCTGAGGATAAGGAGATGACACTGGAAGAATATCAGAAAGTGTTCGAAGAGAAAAGGAAAGCCCTGCAGGGTCTCAAGACTGAAGGTAGAAAGGTGGACACCAAGGAGTTTGAATCCATGAAGCCACTCTCTTGCAAGAAAGAGAATGATGAGATCTTTGCTAAACTGGGATCTGACAAGGACAAGCGCAAAGATGCTTTTGAGAAGGAGAAAGCAAAGAAGGCCTTGAGCATCAATGAGTTTCTGAAGCCTGCTGAAGGAGAGAAGTACTACAACCCAGGTGGACGTGGTGGCCGTGGAGGACGTGGTGGTGGGCGTGGTGGTTCAAGAGGAGGAGGTTATGGTGGAAATGCATACAGCAATGTCCCAGCCCCATCCATTGAGGATCCTGGGCAATTCCCAACCTTGGGTGGTGGCAAGTGA 1116 0.5188 MATINPFDLLGDDAEDPSQLIAAEKLKAAAAAAAAPKKGIEQGKQTAPKKAAQLPSKPLPPSQAVREARNEPSRGGRGGARGFGRGRGGGGYGRDFSNDDNQLPAPPANQGSFEGDSGNPTERRGYGAPRGSYRVGGDRRRGGFSNGEAGEEGRPRRTFDRHSGSGRGGGFKREGAGRGNWGTQSDEIAQVTEEVSNEPEKNVAEEKPAGEEDAAAEGNKDTPANEAEEKEPEDKEMTLEEYQKVFEEKRKALQGLKTEGRKVDTKEFESMKPLSCKKENDEIFAKLGSDKDKRKDAFEKEKAKKALSINEFLKPAEGEKYYNPGGRGGRGGRGGGRGGSRGGGYGGNAYSNVPAPSIEDPGQFPTLGGGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00073 371 MobiDBLite consensus disorder prediction 198 237 - -
Tsu08g00073 371 Pfam Stm1 1 79 IPR019084 -
Tsu08g00073 371 Gene3D - 153 267 - -
Tsu08g00073 371 MobiDBLite consensus disorder prediction 102 117 - -
Tsu08g00073 371 Coils Coil 239 259 - -
Tsu08g00073 371 SMART HABP4_PAI_RBP1_2 155 264 IPR006861 -
Tsu08g00073 371 MobiDBLite consensus disorder prediction 144 168 - -
Tsu08g00073 371 MobiDBLite consensus disorder prediction 183 197 - -
Tsu08g00073 371 MobiDBLite consensus disorder prediction 33 237 - -
Tsu08g00073 371 MobiDBLite consensus disorder prediction 317 371 - -
Tsu08g00073 371 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 370 - -
Tsu08g00073 371 Pfam Hyaluronan / mRNA binding family 155 262 IPR006861 -
Tsu08g00073 371 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 370 IPR039764 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00073 Tsu-Chr8 660736 664637 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00073 K13199 - gmx:100791259 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00073 08 660736 664637 Tsu08g00073 08 660736 664637 ECH
Tsu08g00073 08 660736 664637 Tsu04g01900 04 20455277 20458957 PCT