Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01900 ATGGCCACTACCAATCCATTTGATTTGCTTGGTGATGATGCTGAGGACCCTTCTCAGCTCATCATTGCTGAACAACTTAAAGCGGCTGCTGCTCCGATTAAGAAACCTGCTGACAAAGAACAGGGCAAACGTGGTGGTGCTCAGACTCAGTCTAATAAGCCTGCTCAGTTGCCTTCTAAGCCCACTCCTCCTGCTCAGGCTGTGAGGGAATCCAGAAATGAAGGAGGCCGCATTGAAGGAGGCCGCGGCGGTCGTGGATTTGGTGGACGTGGAGGTGGCCGTGGTTATGGTGGCGGACGTGGAGGTCGCGGGTTTAATCGTGACTACTCTAATGATGAGAATTCTTTCCCTGGTTCTGGAGCACCTGAAAACCACGGTCCTATTGAAGGAGATAATTCATCAGAAAGACGTAACTATGGTGGACCAAGACCTCCCTACCGCGGCGGTCGTCGTGGAGGTTTCAGCAATGGCGAAGCTGGTGAAGAAGGACGTCCTCGAAGAACATTTGAACGCCGCAGTGGAACTGGCCGAGGAAACGAGTTCAAACGTGAAGGTGCTGGACGTGGTAACTGGGGAACAGAAACTGATGAAATTGCCCAGGTGACTGAAGAAGCTGTGATTGAAGGTGAAAAGAATTTAGGTGATGAGAAGCCTGCTGTTGAAAATGCTGCTGCTGAAGGAAACAAGGATAGTCCTGCTAATGAAGCTGAAGAAAAAGAGGCTGAAGATAAGGAGATGACTTTGGAGGAATATAATAAACTTCGTGAAGAGAAAAGGAAGGCTTTGCAAGTACTCAAGACTGAAGCGAGAAAAGTTGACACTAAAGAGTTTGAAACCATGCAAGCCTTATCGTGCAAGAAAGACAATTTTGAAATCTTTGCTAAATTGGGATCCGATAAGGATAAACGCAAAGAGGCTTTTGACAAGGAAGAGAAAGCTAAGAAGTCTGTCAGCATCAATGAGTTTCTGAAGCCAGCTGAAGGGGATGCCTATTACCGCTCAGGTGGGCGTGGTAGGGGGGGATATGGCCGTGGACCACAAGGTGGAGGTGGAGGTTATCGTGGAAATTCGAATAGGAATGTTCGAGCTCCATCCATTGAAGATCCAGGGCATTTCCCAACCTTGGGTGCCAAGTGA 1137 0.4855 MATTNPFDLLGDDAEDPSQLIIAEQLKAAAAPIKKPADKEQGKRGGAQTQSNKPAQLPSKPTPPAQAVRESRNEGGRIEGGRGGRGFGGRGGGRGYGGGRGGRGFNRDYSNDENSFPGSGAPENHGPIEGDNSSERRNYGGPRPPYRGGRRGGFSNGEAGEEGRPRRTFERRSGTGRGNEFKREGAGRGNWGTETDEIAQVTEEAVIEGEKNLGDEKPAVENAAAEGNKDSPANEAEEKEAEDKEMTLEEYNKLREEKRKALQVLKTEARKVDTKEFETMQALSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGDAYYRSGGRGRGGYGRGPQGGGGGYRGNSNRNVRAPSIEDPGHFPTLGAK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01900 378 MobiDBLite consensus disorder prediction 231 246 - -
Tsu04g01900 378 Pfam Hyaluronan / mRNA binding family 165 272 IPR006861 -
Tsu04g01900 378 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 378 IPR039764 GO:0003723
Tsu04g01900 378 MobiDBLite consensus disorder prediction 328 378 - -
Tsu04g01900 378 Coils Coil 234 271 - -
Tsu04g01900 378 Pfam Stm1 1 82 IPR019084 -
Tsu04g01900 378 MobiDBLite consensus disorder prediction 301 318 - -
Tsu04g01900 378 Gene3D - 163 276 - -
Tsu04g01900 378 MobiDBLite consensus disorder prediction 29 246 - -
Tsu04g01900 378 MobiDBLite consensus disorder prediction 301 320 - -
Tsu04g01900 378 SMART HABP4_PAI_RBP1_2 165 273 IPR006861 -
Tsu04g01900 378 MobiDBLite consensus disorder prediction 160 190 - -
Tsu04g01900 378 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01900 Tsu-Chr4 20455277 20458957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01900 K13199 - gmx:100814825 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00073 08 660736 664637 Tsu04g01900 04 20455277 20458957 PCT