Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04693 ATGGAACAAGGGAGGAAGAACAATAACAAAACCCTTCTCTTCCTATTATTAGCCATTTCCTTCACTCTCTCTTCATCTACTGATCCATCTCACTTTGAAACTCAAACTCTACCTATTCACTCTCTCCCCAACCCTTCAACCCTCTCATGGCCCGAATCAGAAGCTCTATCCATACCCGAATCCGACGACCCAGATTCTCTCTCCCTTCAACTACACCACACTGACTCACTCTCTTCCAACAAATCACCACAACAGCTTTTCCATCTCAGACTCCAACGAGACGCTGCCAGAGTCGAATCTTTCACAACACTCGCAGCATCTCTCAACCAAACCCGTCCCCATAGATCCGCAACGGGTTTCAGCAGCTCCATCGTTTCAGGTCTTTCTCAAGGTAGCGGCGAGTATTTCACACGCATAGGTGTTGGAACTCCGGCGAAGTATGTCTTCATGGTTCTCGACACTGGAAGCGACGTCGTTTGGCTTCAATGTGCTCCATGCCGGAAATGTTACTCACAAGCAGATCCAGTTTTTGATCCAACAAAATCACGCTCCTTCGCCGGAATCCCATGCGGTGCTCCTCTTTGCCGGAGACTTGACTCCGCCGGATgcaacaacaagaacaagatTTGTCAGTACCAGGTTTCTTACGGTGATGGTTCTTTCACGTTCGGAGATTTCTCCACTGAAACGCTGACGTTTCGTAAGACACGCGTTGCGCGCGTGGCTTTGGGATGTGGTCATGATAACGAAGGTCTTTTCGTTGGTGCTGCTGGTTTATTGGGTCTTGGTCGTGGAAGATTATCTTTTCCGGTTCAAACCGGTCGCCGGTTTAATCAGAAATTTTCTTATTGTCTTGTAGACCGGTCTGCTACCGCAAAACCTTCTTCAGTTGTTTTTGGTGACTCGGCCGTTTCACGAACCGCCCGGTTCACTCCATTACTTAAAAACCCTAAATTAGATACTTTCTATTACGTTGAACTTATCGGAATCAGTGTCGGTGGTGCACCTGTTCGCGGCGTCTCCGCTTCTCTCTTTAAGCTCGATCTTGCCGGAAACGGTGGTGTTATAATTGATTCGGGTACTTCAGTGACTCGTTTGACCCGACCGGCTTACATTGCACTGAGAGATGCTTTTAAGCTTGGTGCTACGCATCTTAAGAAGGCACCGGAGTTTTCATTATTTGATACTTGCTTTGATTTGTCTGGATTGACGGAGGTGAAGGTGCCAACGGTGGTTCTTCATTTCAGAGGTGCTGATGTGTCACTTCCGGCGACAAATTACTTGATTCCGGTGGATAACAGTGGAACATTCTGCTTTGCCTTCGCCGGAACGATGAGTGGTTTGTCTATCATTGGTAACATTCAACAGCAAGGATTTCGGGTCGTTTATGATCTTGCGAGTTCACGGGTCGGGTTTGCACCGAGAGGGTGCGTTTGA 1437 0.4732 MEQGRKNNNKTLLFLLLAISFTLSSSTDPSHFETQTLPIHSLPNPSTLSWPESEALSIPESDDPDSLSLQLHHTDSLSSNKSPQQLFHLRLQRDAARVESFTTLAASLNQTRPHRSATGFSSSIVSGLSQGSGEYFTRIGVGTPAKYVFMVLDTGSDVVWLQCAPCRKCYSQADPVFDPTKSRSFAGIPCGAPLCRRLDSAGCNNKNKICQYQVSYGDGSFTFGDFSTETLTFRKTRVARVALGCGHDNEGLFVGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSATAKPSSVVFGDSAVSRTARFTPLLKNPKLDTFYYVELIGISVGGAPVRGVSASLFKLDLAGNGGVIIDSGTSVTRLTRPAYIALRDAFKLGATHLKKAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGTFCFAFAGTMSGLSIIGNIQQQGFRVVYDLASSRVGFAPRGCV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04693 478 Gene3D Acid Proteases 299 478 IPR021109 -
Tsu07g04693 478 PANTHER ASPARTYL PROTEASES 40 477 IPR001461 GO:0004190|GO:0006508
Tsu07g04693 478 Pfam Xylanase inhibitor C-terminal 323 473 IPR032799 -
Tsu07g04693 478 SUPERFAMILY Acid proteases 128 477 IPR021109 -
Tsu07g04693 478 MobiDBLite consensus disorder prediction 37 54 - -
Tsu07g04693 478 PRINTS Pepsin (A1) aspartic protease family signature 449 464 IPR001461 GO:0004190|GO:0006508
Tsu07g04693 478 PRINTS Pepsin (A1) aspartic protease family signature 141 161 IPR001461 GO:0004190|GO:0006508
Tsu07g04693 478 PRINTS Pepsin (A1) aspartic protease family signature 355 366 IPR001461 GO:0004190|GO:0006508
Tsu07g04693 478 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 40 477 - -
Tsu07g04693 478 Gene3D Acid Proteases 111 298 IPR021109 -
Tsu07g04693 478 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 150 161 IPR001969 GO:0004190|GO:0006508
Tsu07g04693 478 ProSiteProfiles Peptidase family A1 domain profile. 135 473 IPR033121 -
Tsu07g04693 478 Pfam Xylanase inhibitor N-terminal 135 301 IPR032861 -
Tsu07g04693 478 MobiDBLite consensus disorder prediction 37 70 - -
Tsu07g04693 478 CDD cnd41_like 134 477 IPR033873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04693 Tsu-Chr7 51358660 51360873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04693 125 477 Miscellaneous Gene Families AT1G77480 28.238 1.48e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04693 K22683 - gmx:100794269 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04693 07 51358660 51360873 Tsu07g04693 07 51358660 51360873 ECH
Tsu07g04693 07 51358660 51360873 Tsu08g00911 08 9998568 10000061 PCT