Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04427 ATGACTTCCTTGAGCAGAGAATTGGTGTTTCTGATACTCCAATTTCTGGAGGAGGAAAAGTTTAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCCGGTGAATGGGAAGAAGTTGAGAAGTATTTAGCTGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATAGgcAAGACAAGGCAAAAGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCCACCTTCAATGAGGAACTATACAAAGAAATAACTCAGCTGTTAACTCTTACTAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTATTCCGTGATAAGCTCATCTTCCCTACTCTCAAGTCGTCAAGATTGCGGACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGAtataaaaactttatttattgaTCACTCGTGTTCACCTTCCAATGGTCCTCTAGCACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAACCTGCTGCTTATACTTCACTTGGAATGGGAGCTCATGGTCCCTTTCCACCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAGCCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTTCAACAACTCCTGGCATGGTTGAGTATCAGAGTGCTGATCAGGATCAGCTAATGAAAAGGCTCCGGCCTGCTCCTTCTGTGGAGGAGGTTTCTTATCCTTCAGCTCGACAAGCCTCTTGGTCGCTGGATGATCTTCCAAGAACAGTAGCAATGTCTTTGCATCAAGGATCCTCTGTGAAAAGCATGGATTTCCATCCTTCTCACCAAACCTTACTCCTTGTTGGTTCTAACAATGGTGAAATTTCACTTTGGGAACTTGGGTTGCGAGAAAGGTTGGTCTCAAAACCATTCAAGATATGGGACATATCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATACACCTATTTCTGTCAGTCGTGTCGCATGGAACCATGATGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACATATATGCCTACAATGGATCAAATGAGCTTGCCCAGCGTATGGAGATTGATGCCCATATTGGTGCTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTAACATGTGGTGATGATAAGTTGATAAAGGTGTGGGATTTAACGGGACGAAGACTATTTAACTTTGAAGGGCATGAGGCTCCAGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGTAAGATAAAAGCATGGTTATATGATAATATGGGTTCTAGGGTTGACTATGATGCCCCCGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTATTTTCTTGTGGGACGAGTAAAGATGGAGAGTCGTTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGGCCAGATAAAGTTTTGGGACATGGACAACATTAATCTTCTAACAAGCATTGATGCAGAGGGTGGACTACAGGGACTTCCACACTTGAGATTCAATAAGGAAGGGAATCTTCTTGCTGTTAGTACTGCAGATAATGGATTCAAAATTCTCGCTAATGCTGGTGGTCTTAGATCCCTAAGAACATCTGAAACTCCAACATTTGAAGCATTGAGGTCTCCCATTGAATCTGCTGCAAACAAGGTATCTGGCTCTCCTGCTGTTAATGTTAGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCCCCTGCGAGGCCTTCTCAAATTCTTAATGGTGTTGATCCTACGGGCAGAAGTGTGGAGAAACCCAGGACAGTAGAAGATGCAATAGATAGAACTAAATCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCACTGTCGGTTAGTTACCATGCCTGACAGCACAGATACTTCCAGCAAGGTCGTTCGGCTTTTATATACGAATTCTGGGGCTGGTCTTTTGGCACTTGGCTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCTCGGAATGATCAGAATCCTAGTGGGAAGGCGACCGCAAGCGTTGTTCCGCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTCTCGGGTGTCAACCTTGAAGAAGCGGTTCCTTGTATTGCACTCTCTAAGAATGATTCATATGTTATGTCTGCATGTGGTGGAAAGATTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACATATCTGGCTTTCCACCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTGGATGAGgtgaaatcaaaattgaaggGTCACCAAAAGCGAATTTCTGGTTTAGCTTTTTCAACCAATCTTGGCATCCTGGTTTCATCTGGTGCTGATGCTCACCTTTGCGTGTGGAGTATTGATTCATGGGAGAAAAGAAAAGCAGTTCCTATACAACTACCTGCGGGGAAGGCTCCTGTTGGTGAAACACGAGTGCAGTTCCATTCAGACCAACTCCGGTTATTGGTAGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTAGACAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAACAGTCAGTTAGTTTATGCTACATTTTGCGATGGCAACACCGGGGTTTTTGATGCTGACAGCTTGAGACTAAGATGTCGCATTGCACCATCGACATACTTCACACCAGCGACTTTAAATGGAGGCCAAGCTGTGTATCCTTTTGTTGTGGCAGCTCACCCACTAGAGCCCAACCAGTTTGCCCTTGGATTGACTGATGGGTCAGTGAAGGTGATAGAACCCAATGAATCAGAGGGAAAGTGGGGAACTAGTCCACCTATGGATAATGGATTGATGAATGGTAGGACGGCATCATCTACAACAAGCAACCATACACCTGATCAGGGCACACAAAGATAA 3396 0.4308 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCSPSNGPLAPTPVNLPVAAVAKPAAYTSLGMGAHGPFPPAAATANANALAGWMANASVSSSVQAAVVTASAIPVPQNQVSILKRPRTPSTTPGMVEYQSADQDQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVKSMDFHPSHQTLLLVGSNNGEISLWELGLRERLVSKPFKIWDISACSLPFQAAMVKDTPISVSRVAWNHDGSFVGVAFTKHLIHIYAYNGSNELAQRMEIDAHIGAVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSIDAEGGLQGLPHLRFNKEGNLLAVSTADNGFKILANAGGLRSLRTSETPTFEALRSPIESAANKVSGSPAVNVSPVSCKVERSSPARPSQILNGVDPTGRSVEKPRTVEDAIDRTKSWQLSEIVDPVHCRLVTMPDSTDTSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDSWEKRKAVPIQLPAGKAPVGETRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLVYATFCDGNTGVFDADSLRLRCRIAPSTYFTPATLNGGQAVYPFVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGTSPPMDNGLMNGRTASSTTSNHTPDQGTQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04427 1131 SUPERFAMILY WD40 repeat-like 832 1094 IPR036322 GO:0005515
Tsu07g04427 1131 SUPERFAMILY WD40 repeat-like 323 658 IPR036322 GO:0005515
Tsu07g04427 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Tsu07g04427 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1127 - -
Tsu07g04427 1131 Gene3D - 566 675 IPR015943 GO:0005515
Tsu07g04427 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tsu07g04427 1131 MobiDBLite consensus disorder prediction 1108 1131 - -
Tsu07g04427 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tsu07g04427 1131 Gene3D - 320 565 IPR015943 GO:0005515
Tsu07g04427 1131 MobiDBLite consensus disorder prediction 707 730 - -
Tsu07g04427 1131 SMART ctlh 34 92 IPR006595 -
Tsu07g04427 1131 Pfam WD domain, G-beta repeat 450 484 IPR001680 GO:0005515
Tsu07g04427 1131 Pfam WD domain, G-beta repeat 912 945 IPR001680 GO:0005515
Tsu07g04427 1131 Gene3D - 830 1098 IPR015943 GO:0005515
Tsu07g04427 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 625 IPR001680 GO:0005515
Tsu07g04427 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 485 IPR001680 GO:0005515
Tsu07g04427 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 913 948 - -
Tsu07g04427 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1127 IPR027728 GO:0006355
Tsu07g04427 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 913 954 IPR001680 GO:0005515
Tsu07g04427 1131 MobiDBLite consensus disorder prediction 707 721 - -
Tsu07g04427 1131 SMART WD40_4 906 945 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 1001 1037 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 863 903 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 486 527 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 1051 1092 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 443 484 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 576 616 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 337 376 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 530 573 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 398 437 IPR001680 GO:0005515
Tsu07g04427 1131 SMART WD40_4 824 860 IPR001680 GO:0005515
Tsu07g04427 1131 SMART Lish 4 36 IPR006594 GO:0005515
Tsu07g04427 1131 MobiDBLite consensus disorder prediction 1094 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04427 Tsu-Chr7 49379349 49388486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04427 449 658 Miscellaneous Gene Families AT5G08390 25.701 1.14e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04427 - - gmx:100808421 2029.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04427 07 49379349 49388486 Tsu07g04427 07 49379349 49388486 ECH
Tsu07g04427 07 49379349 49388486 Tsu01g03542 01 43388407 43398593 PCT