Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03542 ATGACTTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTTGATGAGGAGAAGTTCAAGGAATCTGTGCACAAGCTCGAGAAAGAATCAGGGTTCTATTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAAtgggaagaagttgaaaagtATTTATCAGGGTTTACCAAAGTTGACGATAATAGATACTCAATGAAAATattctttgaaattagaaagcAGAAATATCTGGAAGCGCTTGATCGgcaAGATAAGCCAAAGGCTGTAGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAAGAACTGTACAAAGAAATAACCCAGCTGTTAATTCTTAATAACTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGTATTATGTTGATAGAACTAAAAAAACTCATAGAAGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTCCCAACCCTTAAGTCATCAAGACTGAGAACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAACTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTACTGATCATACTTGTTCACCTTCTAATGGTCCACTGGCACCTACACCTGCCAATCTTCCAATTTCTGCAGTTGCAAAGCCCGTTGCTTATACTTCACTTGGAGTTCATGGTcCCTTCCCTCCTGCTGTTGCAACTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCATCAGCTTCATCATCTGTTCAAGCAGCCGTTGTCACAACGTCAACCATACCAGTCCCGCAGAATCAAGTATCTATCTTGAAACGTCCTAGAACACCTCCAACAACTCCTGGGATTGTAGACTATCAGAATGCTGATCACGAACAGTTAATGAAAAGGATTCGTCCAGGTCATTCAGTGGAGGAGGTTTCCTATCCTGTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTCCCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCGCACCATACCTTACTTCTTGTTGGTTCTCATAATGGTGAAATAACCCTCTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCTTGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCTGTCAGCCGTGTCGCATGGAGCCCTGATGGAAATTTTGTGGGTGTTGCGTTTACTAAACATCTGATTCATTTATATGCCTACACCGGGTCAAATGAGCTAGCCCAACGAATAGAGGTCGATGCCCATGTCGGTGGTGTGAATGATTTGTCATTTGCTCTTCCAAATAAACAGTTGTGCATTGTAACTTGTGGAGATGATAAATTGATAAAGGTGTGGGATGCAAATGGTCGACGACTATTTACCTTTGAGGGGCACGAGGCACCTGTATATTCAATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATATGATAACATGGGTTCTAGGGTTGACTATGATGCTCCTGGTCATTGGTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAACGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGATTCAGAAAGAAGTCTGCTGGAGTCGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGTTGCAGGTGAAGACGGCCAAGTGAAGTTTTGGGACATGGACAATATTAATCTTATAACAAGCACTGATGCAGATGGTGGGTTACAGGGCCTTCCACGCTTGAAATTCAATAAGGAAGGAAATATTCTCGCTGTTACTACTGTGGACAATGGATTCAAGATACTGGCGAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCTGCTGCAATCAAGGTATCAGGCTCTTCTACTGTTAATGTCAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCACCTCCAATTCTTAATGGAGTTGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAACTGTGGAAGATACAGCAGATAGAGCTAAACCATGGCAATTGTCTGAAATTTTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCCGACACCACAGACTCTTTCAGCAAGGTTGTACGACTTTTATATACAAATTCTGCTGTTGGTATCTTGGCCCTTGGTTCAAACGGTGTCCAGAAGCTTTGGAAATGGTCCCGCAATGAACAGAACCCAACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCAAACAGCGGTCTTCTGATGACTAATGATATTGCGGGTGTCAACCTTGAGGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAAGTTTCATTATTTAACATGATGACATTCaagGTGATGACAACATTCATGCCACCGCCTCCTGCATCTACCTTTCTAGCTTTCCACCCCCAGGATAACAACATTATATCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTTAGAGTGGATGAGgtgaaatcaaaattgaaggGTCACCAGAGACGAATTACCGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTGTGTGTGTGGAGCATTGATACATGggagaaaagaaaatcaattccAATTCAACTACCTGCGGGAAAGCCACCTGTTGGTGATACACGTGTTCAGTTTCATTCTGATCAACTTCGCTTATTGGTAGTTCATGAGACTCAATTGGCAATATATGAAGCCTCCAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGGCTGCTCCCATATCATATGCAGCCTATTCCTGCAACAGTCAGTTAATATATGCTTCATTTTGTGATGCAAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTTGTCATCCGCCGCTTTAAATAGAAGCCAAGCTGTGTATCCTCTTGTGATTGCTGCTCATCCACTTGAGCCTAACCAGTTTGCTGTTGGGTTGAGTGATGGGTCCGTCAAAGTGATAGAACCCAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCGACGGACAACGGAATCTTGAATGGTAAGGCACCATCCTCATCTACAACTAGCAACCATACAGCCGATCAGGCCCAACGATAA 3390 0.423 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFYFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPSNGPLAPTPANLPISAVAKPVAYTSLGVHGPFPPAVATANANALAGWMANASASSSVQAAVVTTSTIPVPQNQVSILKRPRTPPTTPGIVDYQNADHEQLMKRIRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSHNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVAWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLVAGEDGQVKFWDMDNINLITSTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEALRSPIESAAIKVSGSSTVNVSPVNCKVERSSPVRPPPILNGVDPMSRSVEKSRTVEDTADRAKPWQLSEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGILALGSNGVQKLWKWSRNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKPPVGDTRVQFHSDQLRLLVVHETQLAIYEASKMERIRQWVPQDVLAAPISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPSICLSSAALNRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPTDNGILNGKAPSSSTTSNHTADQAQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03542 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Tsu01g03542 1129 MobiDBLite consensus disorder prediction 1090 1129 - -
Tsu01g03542 1129 Gene3D - 258 537 IPR015943 GO:0005515
Tsu01g03542 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Tsu01g03542 1129 Gene3D - 828 1098 IPR015943 GO:0005515
Tsu01g03542 1129 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Tsu01g03542 1129 SMART ctlh 34 92 IPR006595 -
Tsu01g03542 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tsu01g03542 1129 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 893 1094 IPR011048 -
Tsu01g03542 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Tsu01g03542 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Tsu01g03542 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 330 437 IPR011044 -
Tsu01g03542 1129 MobiDBLite consensus disorder prediction 703 725 - -
Tsu01g03542 1129 MobiDBLite consensus disorder prediction 1097 1129 - -
Tsu01g03542 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Tsu01g03542 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Tsu01g03542 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 397 435 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 1056 1090 IPR001680 GO:0005515
Tsu01g03542 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Tsu01g03542 1129 Gene3D - 538 697 IPR015943 GO:0005515
Tsu01g03542 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tsu01g03542 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Tsu01g03542 1129 SMART Lish 4 36 IPR006594 GO:0005515
Tsu01g03542 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 397 948 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03542 Tsu-Chr1 43388407 43398593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03542 429 642 Miscellaneous Gene Families AT5G08390 22.831 1.71e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03542 - - gmx:100793575 2098.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03542 01 43388407 43398593 Tsu01g03542 01 43388407 43398593 ECH
Tsu07g04427 07 49379349 49388486 Tsu01g03542 01 43388407 43398593 PCT