Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04366 ATGAAGTTCATCGCAGTATTGTTGCTTGTGGTGTTCACCACCTTCACCACATCAGATCCTGATAATCTTCAAGACCTCTGTGTTGCAGACCTTGATTCCAAGATTCTCGTGAATGGATTCACCTGCAAACCGGCTACAAACGTAACCGCGGCCGATTTCTCGTCTAACATACTAGCCAAACCAGGTGCAACAAACAACACATTTGGTTCTTTAGTAACAGCAGCCAATGTTCAAAAAATCCCAGGACTAAACACACTTGGTGTTTCATTAGCAAGAATTGATTATGCACCAGGTGGAATCAACCCACCACACACTCATCCACGTGCAACAGaaattgtttttgttcttgaagGTCAATTAGATGTTGGATTTATAACAACAGCTAATGTTTTGATATCAAAAACTATTGTTAAGGGTGAAACATTTGTGTTTCCTAAAGGATTGGTTCATTTCCAAAAGAACAATAATGGTTATGAAGGTGCTTCAGTGATTTCAGCATTTAATAGTCAATTGCAAGGGACAGTGAATATTCCTCTTACTTTGTTTGCTGCTACACCACCTGTTGCAGATAATGTGTTGACTCAAACATTCCAAATTGGTACTAAAGAAGTTCAGAAAATTAAGGCTAAGCTTGCACCCAAGAAATAG 648 0.3827 MKFIAVLLLVVFTTFTTSDPDNLQDLCVADLDSKILVNGFTCKPATNVTAADFSSNILAKPGATNNTFGSLVTAANVQKIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTIVKGETFVFPKGLVHFQKNNNGYEGASVISAFNSQLQGTVNIPLTLFAATPPVADNVLTQTFQIGTKEVQKIKAKLAPKK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04366 215 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Tsu07g04366 215 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 213 - -
Tsu07g04366 215 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 5 213 - -
Tsu07g04366 215 Gene3D Jelly Rolls 18 213 IPR014710 -
Tsu07g04366 215 SUPERFAMILY RmlC-like cupins 19 210 IPR011051 -
Tsu07g04366 215 Pfam Cupin 58 205 IPR006045 -
Tsu07g04366 215 SMART Cupin_1_3 55 205 IPR006045 -
Tsu07g04366 215 CDD cupin_OxOx 19 211 - -
Tsu07g04366 215 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Tsu07g04366 215 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Tsu07g04366 215 PRINTS Germin signature 104 124 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04366 Tsu-Chr7 48931384 48933200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04366 4 215 Miscellaneous Gene Families AT3G05930 51.643 7.05e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04366 - - gmx:100791628 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04366 07 48931384 48933200 Tsu07g04366 07 48931384 48933200 ECH
Tsu07g04366 07 48931384 48933200 Tsu01g03630 01 44138122 44140213 PCT