Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03630 ATGAAGCTTGCACATTTCTTCTTTCCTGTGACTTTGGCTATACTCTTAGCCACCACTTTCTCATCAGATCCTGACTCTCTTCAAGACCTATGTGTTGCTGACCTTTCCTCAGGCGTGTCAGTGAACGGGTTCACTTGCAAAGCGGCATCCAAGGTAAATGTCACTGATTTCTCCTCCAACATACTAGCCAAACCAGGATCCACCAACAACACATTTGGCTCAGTGGTCACTGGAGCCAATGTTCAAAAAGTCCCAGGACTCAACACTCTCGGCGTGTCTCTGTCAAGGATCGACTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACAGAGGTGGTGTTTGTACTCGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCAAAAACCATTAACAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTAGTTCACTTTCAAAAGAACAATGCCAATGTACCTGCTGCTGTTCTTTCAGCCTTCAACAGCCAACTTCCTGGTACACAGTCCATCGCTACTACCTTGTTTGCGGCCACGCCTTCTGTTCCGGACAATGTGTTGACCAAGACATTCCAAGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCCAGGCTTGCAACCAAAAAGTAA 657 0.4749 MKLAHFFFPVTLAILLATTFSSDPDSLQDLCVADLSSGVSVNGFTCKAASKVNVTDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLATKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03630 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Tsu01g03630 218 Gene3D Jelly Rolls 22 217 IPR014710 -
Tsu01g03630 218 Pfam Cupin 62 207 IPR006045 -
Tsu01g03630 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Tsu01g03630 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Tsu01g03630 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Tsu01g03630 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Tsu01g03630 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 216 - -
Tsu01g03630 218 PANTHER GERMIN-LIKE PROTEIN 12 216 - -
Tsu01g03630 218 SMART Cupin_1_3 59 208 IPR006045 -
Tsu01g03630 218 CDD cupin_OxOx 23 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03630 Tsu-Chr1 44138122 44140213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03630 10 218 Miscellaneous Gene Families AT3G05930 55.714 1.65e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03630 - - gmx:100791828 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03630 01 44138122 44140213 Tsu01g03630 01 44138122 44140213 ECH
Tsu07g04366 07 48931384 48933200 Tsu01g03630 01 44138122 44140213 PCT