Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04340 ATGAGGAAACCTTCAACAATTGTGGATGTGTTTCTGGTACTTGCATTGTTGTGTTGTAGCTCATGGAAAGTGTGGAGCATCACACTTTGCAAAGAGACAAACTTGGACAAAGTTAGACCTCATAGTGTCAGTATTACTGAATTTGGTGCTGTTGGTGACGGGATCACTCTCAACACAAAATCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTTTCAGACAAAGGTGGAGCCAAACTTTTTGTTCCAGCCGGTAGGTGGTTAACCGGTAGTTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAATTTCGAGGATTGGCCAGTTGTTGATCCTCTACCGTCATATGGACGGGGAAGGGAATTGCCGGGTGGAAGACATAGGAGCCTCATCTATGGAAGCAATTTGACTGATGTTATCATAACTGGTAATGAGGGAATTATTGATGGTCAAGGGAGTATCTGGTGGAGCAAGTTTAGGAACAAAACTCTGGATTATACACGTCCGCATTTGGTAGAATTGATTAATTCAACTGGGATTCTCATTTCGAATTTAACATTCTTGAATTCTCCATTTTGGACCATTCATCCTGTATATTGCAGCCAAGTCACAATTCAGAATGTCACAATTCTTGCTCCTCTCGATTCACCAAACACAGACGGGATAGATCCAGACTCTTCTGATGATGTGTGCATTGAAGACTGTTATATAAGCACTGGCGATGATTTGATTGCCATCAAAAGTGGTTGGGATGAGTATGGAATTGCGTTTGGTCGTCCGAGCACAAATATTGTCATCCACAGGCTTGTTGGGAGAACTCATACAAGCGCAGGGATAGCTATTGGAAGTGAGATGTCGGGCGGTGTATCAAACGTTCGTGCTGAAGATATACACTTTTATGATTCATATACTGCAATCAGAATAAAGACTTCACCCGGAAGAGGTGGTTATGTTAGAAACGTCTATGTCTCTAACATGACATTGAATAATGTTGATATTGCTATTAGGTTCACTGGTTCATATGGTGATCATCCAGATGATGGTTATGACCCAAATGCTCAGCCAGTGATTGAAAGAATTACTTTCGAGGATGTGACAGGAGAAAATATAACAAAAGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTGGATATCTGCTTATCAAATATCACCCTTAATGTGAGGTCAAACTATCCATGGAACTGCTCTAATGTTAGAGGATACTCTGACAAGGTTTTGCCGGAAGCTTGTGAGCCGCTAAAAGAGAGAATATTTCCTGACCATTGTTCGGACTGTTACCATTTGTCGAATCATCAACAAAgttcaaataatcaaaacataGGACAAAAATTTCACTTGACATAA 1401 0.4019 MRKPSTIVDVFLVLALLCCSSWKVWSITLCKETNLDKVRPHSVSITEFGAVGDGITLNTKSFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNFEDWPVVDPLPSYGRGRELPGGRHRSLIYGSNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELINSTGILISNLTFLNSPFWTIHPVYCSQVTIQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGRTHTSAGIAIGSEMSGGVSNVRAEDIHFYDSYTAIRIKTSPGRGGYVRNVYVSNMTLNNVDIAIRFTGSYGDHPDDGYDPNAQPVIERITFEDVTGENITKAGLIEGIEGDNFVDICLSNITLNVRSNYPWNCSNVRGYSDKVLPEACEPLKERIFPDHCSDCYHLSNHQQSSNNQNIGQKFHLT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04340 466 Pfam Glycosyl hydrolases family 28 80 418 IPR000743 GO:0004650|GO:0005975
Tsu07g04340 466 Gene3D - 23 424 IPR012334 -
Tsu07g04340 466 SUPERFAMILY Pectin lyase-like 34 432 IPR011050 -
Tsu07g04340 466 SMART pbh1 328 349 IPR006626 -
Tsu07g04340 466 SMART pbh1 210 236 IPR006626 -
Tsu07g04340 466 SMART pbh1 237 269 IPR006626 -
Tsu07g04340 466 SMART pbh1 271 293 IPR006626 -
Tsu07g04340 466 SMART pbh1 299 320 IPR006626 -
Tsu07g04340 466 PANTHER OS07G0245200 PROTEIN 7 451 - -
Tsu07g04340 466 PANTHER PECTIN LYASE-RELATED 7 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04340 Tsu-Chr7 48681717 48684224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04340 1 452 Glycoside Hydrolase AT3G62110 68.122 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04340 - - gmx:100782602 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04340 07 48681717 48684224 Tsu01g03671 01 44462526 44465153 PCT