Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03671 ATGAAGAGACTTTCAGCTGTGGATGTGTTTTTGGTACTTGCATTGATTGGCTGTAGCTTATGGACAGTTTGTAGCAGCTCAAGCTGCAAACAGATAAACACAATGGAAGTTCGACCACACAGTGTCAGTATTACTGAATTTGGAGCAGTTGGTGATGGGATCACTCTCAATACAAAGGCGTTTCAGAATGCCATCTTCTACCTAAACTCATATGTTGACAAAGGTGGAGCCAAGCTTTTTGTTCCTGCTGGTCAGTGGTTAACTGGTAGTTTTGATCTCATCAGTCATCTGACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTTTGAAGATTGGCCAGTTGTGGATCCTCTGCCATCATATGGCAGGGGAAGGGAGTTGCCGGGTGGACGGCACAGAAGCCTCATTTATGGGAACAATTTAACTGATGTCATCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAACAAATTTCGTAACAAAACACTAGACCATACACGCCCTCATTTAGTCGAACTGATGAATTCAACAGAGGTTCTTATTTCAAATGTAACCTTCTTGAATTCACCATTTTGGACAATTCATCCTGTATATTGCAGCCGTGTTAGAGTTCAGAATGTCACAATCCTTGCTCCTACTGGCTCACCAAATACAGACGGGATTGATCCAGATTCTTCTGATGATGTGTGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATAAAAAGTGGATGGGATGAATATGGAATTTCATTTGGCCGACCAAGTACAAACATTATCATCCGCAGGCTCACTGGGAAGACAACGAGTGCCGGAATCTCTATTGGTAGTGAGATGTCTGGAGGTGTTTCAGAAGTTCATGCAGAAGATATTTACATTTTCGATTCACATAGTGCAATTAGAATAAAGACTTCTCCCGGTAGGGGTGGTTATGTTAGAAATGTATATATCTCAAACATGACATTGGTCAATGTAAGTATTGCTATTAGGTTCAGTGGTTTATATGGAGAGCATCCAGATGACAGATATGATCCAGATGCTCTACCTGTGATAGAAAGGATTACTGTCAAGGATGTGATAGGGAAAAACATCAAACGCGCCGGCCTTATACAAGGTATTAAAGGTGACAACTTTTCCAATATTTGTCTATCAAACATCACTTTTAACGTGACCTCGAAAATTCCATGGAACTGCTCTTACATTAAAGGATACTCTGAATTGGTTTATCCGGAAGCTTGTGAGCAACTCAATGAGAGAATATTTCCTGATCATTTTTCAGACTGTTACAAGTTACCAGATCTCATAAAGAGTTCGAGTAGTCGAAACAGGGCTGCTTGGTTATCTTGGTAG 1392 0.4073 MKRLSAVDVFLVLALIGCSLWTVCSSSSCKQINTMEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSYVDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNFEDWPVVDPLPSYGRGRELPGGRHRSLIYGNNLTDVIITGNNGTIDGQGSIWWNKFRNKTLDHTRPHLVELMNSTEVLISNVTFLNSPFWTIHPVYCSRVRVQNVTILAPTGSPNTDGIDPDSSDDVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIRRLTGKTTSAGISIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMTLVNVSIAIRFSGLYGEHPDDRYDPDALPVIERITVKDVIGKNIKRAGLIQGIKGDNFSNICLSNITFNVTSKIPWNCSYIKGYSELVYPEACEQLNERIFPDHFSDCYKLPDLIKSSSSRNRAAWLSW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03671 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Tsu01g03671 463 PANTHER OS07G0245200 PROTEIN 7 449 - -
Tsu01g03671 463 PANTHER PECTIN LYASE-RELATED 7 449 - -
Tsu01g03671 463 Pfam Glycosyl hydrolases family 28 79 416 IPR000743 GO:0004650|GO:0005975
Tsu01g03671 463 Gene3D - 20 417 IPR012334 -
Tsu01g03671 463 SUPERFAMILY Pectin lyase-like 35 429 IPR011050 -
Tsu01g03671 463 SMART pbh1 297 318 IPR006626 -
Tsu01g03671 463 SMART pbh1 270 291 IPR006626 -
Tsu01g03671 463 SMART pbh1 326 347 IPR006626 -
Tsu01g03671 463 SMART pbh1 209 235 IPR006626 -
Tsu01g03671 463 SMART pbh1 236 268 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03671 Tsu-Chr1 44462526 44465153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03671 1 463 Glycoside Hydrolase AT3G62110 67.230 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03671 - - mtr:MTR_1g086030 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03671 01 44462526 44465153 Tsu01g03671 01 44462526 44465153 ECH
Tsu07g04340 07 48681717 48684224 Tsu01g03671 01 44462526 44465153 PCT