Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04250 ATGGcttcactttcattttctttctcttcttctttttgtctccttcttcttcttcctctcatctctctttcttttcttcctcATTGTAATTCCTTCCCCGCCTATCATAACCACCACCCTCACTCTGCTACTCATAACTACAAAGATGCTCTCACCAAATCAATCATCTTCTTTGAAGGTCAAAGATCAGGGAAGCTCCCTTCCAATCAAAGAATGTCTTGGAGGAGAGACTCTGCTCTTTCCGATGGCTCGTCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCAGGAGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACAACTACAATGCTCTCATGGAGTGTTATTGAGTTCGGTGGGGCGATGAAAACTGAATTGGAGAATGCAAGAGAGGCCATTCGTTGGGGCACTGACTATCTTCTCAAAGCCACTGCATATCCAGACACCATTTATGTTCAGGTAGGAGATGCCGAGAAAGATCACGCTTGTTGGGAGAGACCAGAGGATATGGATACTCCAAGAAATGTGTATAAGATAGATAGAAACAATCCCGGATCTGATGTGGCTGCTGAAACTGCTGCTGCTCTTGCTTCTGCTTCtatagttttcaaaaaaattgaccCCATTTACTCTAAAACTTTACTTACAAGAGCTATCAAGGTTTTCCAGTTTGCTGATAAATATAGGGGACCCTACAGCAATAGCTTGAAGCCTATTGTATGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAATTGTTGTGGGGTGCTGCATGGCTTCACAAGGCAACCAAGAATCCAATGTACTTAAACTACATTAAGCTCAATGGACAGATCCTTGGGGCTGATGTGTCTGATAATACCTTTGGATGGGATAACAAACATGTTGGAGCAAGGATACTACTTTCTAAGGAATTTCTTGTTCAGAAGGTGAAATCTCTTTATGACTACAAGGGTCATGCAGACAATTTTATCTGTTCTATTATCCCTGGATCATCTTTCTCTTCCTCTCAGTATACTCCAGGAGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAATATGTCACATCCACCTCCTTCCTACTCTTAACTTATGCAAAATACTTAACCACTGCCCACACAGTTGTGAACTGTGGTGGAACCATCATAACTCCAAAGAGCCTAAGAGCTATAGCCAAAAAACAGGTGGATTACTTGTTGGGAGACAATCCATTGAAGATGTCATATATGGTAGGGTATGGTACAAGGTACCCACAAAGGATACACCATAGGGGCTCATCACTTCCATCTATTGCTGTTCACCCTGATCAGATACAATGTTCAGAAGGATTCAATGTAATGAACACACAATCCCCTAACCCCAACATTCTAGTGGGTGCTGTTGTGGGGGGACCTGATTTGCATGATAGTTTCCCAGATGAACGATCAGATTATGAACAATCAGAGCCAGCTACTTACATAAACGCACCTCTTGTAGGATCACTGGCTTATCTTGCACACTCATTTGGACAACTCTAA 1533 0.3992 MASLSFSFSSSFCLLLLLPLISLSFLPHCNSFPAYHNHHPHSATHNYKDALTKSIIFFEGQRSGKLPSNQRMSWRRDSALSDGSSMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGAMKTELENAREAIRWGTDYLLKATAYPDTIYVQVGDAEKDHACWERPEDMDTPRNVYKIDRNNPGSDVAAETAAALASASIVFKKIDPIYSKTLLTRAIKVFQFADKYRGPYSNSLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKLNGQILGADVSDNTFGWDNKHVGARILLSKEFLVQKVKSLYDYKGHADNFICSIIPGSSFSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTTAHTVVNCGGTIITPKSLRAIAKKQVDYLLGDNPLKMSYMVGYGTRYPQRIHHRGSSLPSIAVHPDQIQCSEGFNVMNTQSPNPNILVGAVVGGPDLHDSFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04250 510 PANTHER ENDOGLUCANASE 17 8 510 - -
Tsu07g04250 510 Gene3D - 42 510 IPR012341 GO:0005975
Tsu07g04250 510 Pfam Glycosyl hydrolase family 9 47 499 IPR001701 GO:0004553|GO:0005975
Tsu07g04250 510 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 403 429 IPR018221 -
Tsu07g04250 510 SUPERFAMILY Six-hairpin glycosidases 44 508 IPR008928 GO:0005975
Tsu07g04250 510 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 476 494 IPR033126 -
Tsu07g04250 510 PANTHER ENDO-1,4-BETA-GLUCANASE 8 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04250 Tsu-Chr7 48000153 48002536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g04250 33 506 Glycoside Hydrolase AT1G02800 78.059 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04250 K01179 - gmx:100793900 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04250 07 48000153 48002536 Tsu01g03786 01 45579554 45582593 PCT