Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03786 ATGACTCTTTCCCTTTCCCTCACCACTCTCCTCTTCCTTCTTTCCCTATTCTCCTTTTCACTTCTCAACACTCAAGCCATTCCACTCCATCGCCACCACCCTCACTTCGCCACACACAACTACAAAGATGCTCTCACAAAATCCATTCTCTTTTTTGAAGGCCAAAGATCAGGAAAACTCCCTTCAAATCAGAGAATCTCATGGAGAAAAGACTCTGGTCTCTCTGATGGTTCAGCATTACATGTTGATTTGGTTGGAGGGTATTATGATGCTGGTGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACTACCACCATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGTTGATGAAAGGTGAGTTACCAAATGCTAGAGAAGCTATTCGTTGGGCTACTGATTATCTTCTCAAAGCCACTGCAAATCCAAACACCATTTATGTTCAGGTTGGAGATGCTAAAAAGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTTTTTAAGGTTGATGCAAATGCACCTGGTTCAGAAGTTGCTGCAGAAACTGCTGCAGCATTAGCAGCTGCTTCTCTTGTTTTCAGAAGAAGTGATCCAACATACTCCAAAGTTTTAGTTAGAAGGGCTATTAGGGTCTTTCAGTTTGCTGATAAACACAGAGGATCTTATAGCAATGCCTTGAAACCCTTTGTGTGTCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGTTATTGTGGGGTGCTGCTTGGTTACATAAAGCTACAAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGTCAAATCCTAGGAGCTGCAGAGTATGACAACACTTTTGGTTGGGATAACAAACATGTTGGAGCAAGGATTCTTCTTTCAAAGGAATTTCTAGTTCAAAGGGTAAAATCACTCCATGACTACAAGGGTCATTCAGATAATTTCATTTGTTCTTTAATTCCTGGAGGTGGATCTTCTTCTGCACAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAGTATGTCACATCTACTAGCTTCTTGTTGGTAACATATGCCAAATACTTGACCAAATCACATACTGTTGTGCAATGTGGTGGTACCACTGTTACACCAAAGAAACTCAGAACCTTAGCCAAGAAACAGGTGGACTACTTGCTAGGAGATAACCCATTGAAGATGTCATACATGGTGGGGTATGGACCAAGATATCCACAGAGGATACACCACAGAGGATCATCACTTCCTTCAATGGCTGTACATCCAGGAAAGATCCAATGTTCAGCAGGATTCAGTGTAATGAGTTCACAATCCCCTAATCCTAATATTCTAGTGGGTGCTGTTGTTGGTGGACCAGATCAACATGATAGGTTTCCAGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATGTTAATGCACCACTTGTAGGAACATTGGCTTATCTTGCACACTCATTTGGTCAAATTTAG 1515 0.4152 MTLSLSLTTLLFLLSLFSFSLLNTQAIPLHRHHPHFATHNYKDALTKSILFFEGQRSGKLPSNQRISWRKDSGLSDGSALHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELPNAREAIRWATDYLLKATANPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKVDANAPGSEVAAETAAALAAASLVFRRSDPTYSKVLVRRAIRVFQFADKHRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEYDNTFGWDNKHVGARILLSKEFLVQRVKSLHDYKGHSDNFICSLIPGGGSSSAQYTPGGLLFKMSDSNMQYVTSTSFLLVTYAKYLTKSHTVVQCGGTTVTPKKLRTLAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDERSDYEQSEPATYVNAPLVGTLAYLAHSFGQI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03786 504 Gene3D - 37 504 IPR012341 GO:0005975
Tsu01g03786 504 SUPERFAMILY Six-hairpin glycosidases 38 502 IPR008928 GO:0005975
Tsu01g03786 504 PANTHER ENDO-1,4-BETA-GLUCANASE 7 504 - -
Tsu01g03786 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 397 423 IPR018221 -
Tsu01g03786 504 PANTHER ENDOGLUCANASE 17 7 504 - -
Tsu01g03786 504 Pfam Glycosyl hydrolase family 9 41 494 IPR001701 GO:0004553|GO:0005975
Tsu01g03786 504 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 470 488 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03786 Tsu-Chr1 45579554 45582593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03786 1 500 Glycoside Hydrolase AT1G02800 74.950 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03786 K01179 - gmx:100789144 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03786 01 45579554 45582593 Tsu01g03786 01 45579554 45582593 ECH
Tsu07g04250 07 48000153 48002536 Tsu01g03786 01 45579554 45582593 PCT