Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g04183 atggagCACACGTTCCCTCAGAAAGTTCTAGAACACCTATTTTCATTCATCGATTCTAACAAAGACCGAAACGCAATCTCTCTAGTATCCAAGTCATGGTACGAGATCGAACGCCGATGCAGGAAGAAGATCTTCATCGGAAACTGCTACGCCGTGAGTCCTACAACAGTGATCAAACGATTCCCGGAGTTAAGATCCATTACGTTGAAAGGTAAACCGCACTTTGCGGACTTCAATTTAGTACCTGACGGTTGGGGCGGTTACGTTCATTCTTGGATCGAAGCCATGGCTGTTAACATTCCTTTGCTTGAAGAGATTCGATTGAAGAGAATGGTTGTAACTGATGAGAGCTTGGAGCTTATAGCTAAATCGTTTAAGAATTTCAAAGTGTTGGTTCTTATTTCGTGTGAAGGTTTTTCTACTGATGGACTTGAAACCATTGCTTCCAATTGCAGGAATTTGGAGGAGTTGAACTTGCAGGAGAGTGATGTGGATGACCTTAGTGGGGATTGGATATGCTATTTCCCTGATTCCTACACATCATTAGTTTCACTTAATATATCTTGCTTGAACAATGAAGTGAATTTGTCTGCACTAGAGGGCCTGCTTGGTAGGTGTCCCAACCTCCAGACACTTTGTCTCAATCATGCTGTCCCCCTTGATCAACTTCCCAGCTTACTTAGCCGATGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACCGAGGAGATGCGTCCAGAAGTTTTGTCAAGCCTAATAACAGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGCTTTTGGAATGTCCTGCCATCCTACCTTCCGGCAGTATACCCGATATGCCCTAGGCTAACATCACTAAACCTGAGTTATGCTATCATTCAAAGCTCTGATATTGTCAAACTTATCGGTCAATGCCCCAATTTGTTGCGGTTATGGGTGCTTGATTACATAGAAGATGTTGGTCTGGAAGCTGTTGCTGCTTCATGCAAGGATCTACAAGAGTTGAGGGTGTTTCCATCTGACCCATCTTGTCTAGAACCAAATATTGCATTGACAGAAAGGGGCCTTGTCTCTGTATCTAAAGGCTGCCCAAAGCTCCAGTCAGTTCTATACTTTTGTCGACAAATGTCTAATGCTGCTCTTGATGCTATTGCGCAGAATAGGCCTAATTTGACCCGTTTTCGCCTATGTATTCTTGAGCCTCATACTCCTGACTATCTTACCCTTCAACCACTGGATTCTGGTTTTGGAGCTATTGTTGAGCATTGCAAGGACCTTCAGCGCCTTTCCCTTTCTGGTCTTCTTACAGATCGTGTTTTTGAGCATATTGGAACTCATGCGAAGAAGCTGGAAATGCTATCTGTGGCTTTTGCTGGAGATAGCGATTTGGGTCTCCATTATGTGTTGTCTGGGTGTGAGAATCTTAGGAAGCTAGAGATCAGGGACTGCCCCTTTGGTGACGAGGCCCTTTTGGTTAATGCTGCAAAACTAGAGACAATGCGGTCCCTTTGGATGTCCTCTTGCTCAGTGAGTTTTGGAGCGTGTAAGTTACTTGGTCAGAAAATGCCCAGACTTAACGTTGAAGTCATTGATGAGAGTGGGCCTCCAGATTCAAGACCTGATAATTGTCCTGTTGAGAAGCTTTATATATACAGGAGTATTGCTGGGCCAAGGTTGGACATGCCTGGTTTTGTCTGGACAATGAAGGATGATTCTTCACGAAGGCTCGAGCTTGACGTGGCAGGAGTAGAAGCTCAGTTTAGAAATCTCTAA 1788 0.443 MEHTFPQKVLEHLFSFIDSNKDRNAISLVSKSWYEIERRCRKKIFIGNCYAVSPTTVIKRFPELRSITLKGKPHFADFNLVPDGWGGYVHSWIEAMAVNIPLLEEIRLKRMVVTDESLELIAKSFKNFKVLVLISCEGFSTDGLETIASNCRNLEELNLQESDVDDLSGDWICYFPDSYTSLVSLNISCLNNEVNLSALEGLLGRCPNLQTLCLNHAVPLDQLPSLLSRCPQLVELGTGVYSTEEMRPEVLSSLITAFSGCKQLKSLSGFWNVLPSYLPAVYPICPRLTSLNLSYAIIQSSDIVKLIGQCPNLLRLWVLDYIEDVGLEAVAASCKDLQELRVFPSDPSCLEPNIALTERGLVSVSKGCPKLQSVLYFCRQMSNAALDAIAQNRPNLTRFRLCILEPHTPDYLTLQPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEHIGTHAKKLEMLSVAFAGDSDLGLHYVLSGCENLRKLEIRDCPFGDEALLVNAAKLETMRSLWMSSCSVSFGACKLLGQKMPRLNVEVIDESGPPDSRPDNCPVEKLYIYRSIAGPRLDMPGFVWTMKDDSSRRLELDVAGVEAQFRNL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g04183 595 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Tsu07g04183 595 Pfam F-box 4 43 IPR041567 -
Tsu07g04183 595 SMART fbox_2 5 46 IPR001810 GO:0005515
Tsu07g04183 595 SMART LRR_CC_2 310 333 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 100 124 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 428 451 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 125 150 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 368 392 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 477 501 IPR006553 -
Tsu07g04183 595 SMART LRR_CC_2 285 309 IPR006553 -
Tsu07g04183 595 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 574 - -
Tsu07g04183 595 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 3 574 - -
Tsu07g04183 595 Gene3D - 1 41 - -
Tsu07g04183 595 SUPERFAMILY RNI-like 64 531 - -
Tsu07g04183 595 Gene3D Ribonuclease Inhibitor 42 573 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g04183 Tsu-Chr7 47509470 47512981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g04183 K14485 - gmx:100816241 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04183 07 47509470 47512981 Tsu01g03835 01 46149980 46153490 PCT