Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03835 ATGCCGAGAATAGCGTATTCATTTCCTGAAGAAGTTCTCGAGCATGTTTTCTCATTCATTGAATCAACAACAGATAGAGGTTCGATCTCGTTAGTATGTAAATCATGGTACGAGATCGAACGGTGGTGTAGAAAGAGAGTCTTCGTCGGAAACTGTTATGCGGTGAGTCCAGCGATGGTGATAAAACGGTTTCCGAAACTGAGATCTATAACACTGAAAGGGAAACCACACTTTGCGGACTTCAATTTAGTACCTGAAGGTTGGGGTGGTTATGTTTGTCCTTGGATTAAAGCTATGGCTGTTGCTTATCCTTGTTTGGAAGAGATTAAGCTTAAGAGAATGATTATTAGTGATGATTGTTTGGATCTTATTGCTAAATCTTTCAAGAATTTCACTGTTTTAGTTCTTACTTCTTGTGAAGGTTTCACTACTGATGGACTTGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCGAGAGAGTGAAGTGGAGGACATCTGCGGTCATTGGCTAAGCCATTTTCCGGATTCATACACATCATTGGTTTCTCTAAACATCTCTTGCTTAGCAAATGAGGTGAATTTTCCTGCACTAGAGCGTCTGGTTAGTAGGTGTCCTAACTTGCAGACTCTCCGCCTCAATCGTGCTGCACCCCTTGATAAGCTTGCCAATCTTCTGCGTGGGGCTCCCCAGCTGGTTGAGTTAGGTACTGGAGCCTACACGAGCGAGATGCGGCCAGATGTCTTTTCGAACCTGGCAGCAGCATTTTCTGGGTGCAAGCAAATGAAGGGCTTGTCTGGCTTTTGGGATGTGCTCCCTTCCTACCTTCCTGCAGCATATCCAGTATGCTCTAGACTCACATCACTAAACTTGAGTTATGCTACAATTCAAAGCCCGGATCTTATCAAGCTTGTTGGTCAATGCCAGAGTTTGCAGCGCTTATGGGTGTTGGATTACATTGAAGATGCTGGCCTTGATATGCTTGCTGCAACGTGTAAGGATCTGAGGGAGTTGAGAGTGTTTCCTTCGGACCCGTTTGGGTTGGAACTAAATGTAGCACTGACAGAGCAGGGCCTTGTTTCTGTGTCCGAAGGTTGTCCCAAGCTCCATTCAGTTCTATATTTTTGTCGACAAATGACCAATGCTGCCTTAAATATAATTGCTCGGAACAGGCCTAATATGACTCGTTTTAGACTCTGTATTATTGAGCCTCGAACTCCTGACTATCTTACCCTTCAGCCTTTGGATGCTGGTTTTGGAGCTATTGTTGAGCATTGTAAGGGCCTTCAGCGCCTTTCCCTTTCAGGGCTTCTTACTGACCGTGTCTTTGAGTATATAGGGACGCATGCAAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAACGCTGCAAAGTTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCATGTAAACTGTTGGGACAGAAGTTGCCCAGACTCAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCGGATAGCAGTCCTGTTGAGAAGCTATACATATACAGGACCGTTTCTGGGCCTAGATTGGACATGCCTGGTTATGTATGGACAATGGAAGATGATTCTTGCATATCTTGA 1749 0.4528 MPRIAYSFPEEVLEHVFSFIESTTDRGSISLVCKSWYEIERWCRKRVFVGNCYAVSPAMVIKRFPKLRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAYPCLEEIKLKRMIISDDCLDLIAKSFKNFTVLVLTSCEGFTTDGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNLQTLRLNRAAPLDKLANLLRGAPQLVELGTGAYTSEMRPDVFSNLAAAFSGCKQMKGLSGFWDVLPSYLPAAYPVCSRLTSLNLSYATIQSPDLIKLVGQCQSLQRLWVLDYIEDAGLDMLAATCKDLRELRVFPSDPFGLELNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALNIIARNRPNMTRFRLCIIEPRTPDYLTLQPLDAGFGAIVEHCKGLQRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDERGPPDSRPDSSPVEKLYIYRTVSGPRLDMPGYVWTMEDDSCIS 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03835 582 Gene3D - 2 44 - -
Tsu01g03835 582 SUPERFAMILY RNI-like 40 533 - -
Tsu01g03835 582 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Tsu01g03835 582 Pfam Leucine Rich repeat 287 308 IPR001611 GO:0005515
Tsu01g03835 582 Pfam F-box 6 46 IPR041567 -
Tsu01g03835 582 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Tsu01g03835 582 SUPERFAMILY F-box domain 7 48 IPR036047 GO:0005515
Tsu01g03835 582 SMART LRR_CC_2 154 191 IPR006553 -
Tsu01g03835 582 SMART LRR_CC_2 128 153 IPR006553 -
Tsu01g03835 582 SMART LRR_CC_2 430 453 IPR006553 -
Tsu01g03835 582 SMART LRR_CC_2 479 503 IPR006553 -
Tsu01g03835 582 SMART LRR_CC_2 370 394 IPR006553 -
Tsu01g03835 582 SMART fbox_2 8 49 IPR001810 GO:0005515
Tsu01g03835 582 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Tsu01g03835 582 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03835 Tsu-Chr1 46149980 46153490 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03835 K14485 - gmx:100809794 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03835 01 46149980 46153490 Tsu01g03835 01 46149980 46153490 ECH
Tsu07g04183 07 47509470 47512981 Tsu01g03835 01 46149980 46153490 PCT